Basic Statistics
Measure | Value |
---|---|
Filename | SRR805195_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 14968197 |
Sequences flagged as poor quality | 0 |
Sequence length | 46 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT | 540678 | 3.612178540942506 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGTGAGATGGC | 34904 | 0.23318773797538878 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCC | 30418 | 0.2032175284705299 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGGCTGGTGAGATGG | 27586 | 0.18429741404392258 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 224515 | 0.0 | 38.850857 | 1 |
AGCAGTG | 229180 | 0.0 | 38.043457 | 2 |
GTGGTAT | 228900 | 0.0 | 37.862823 | 6 |
TCAACGC | 229405 | 0.0 | 37.853577 | 12 |
AGTGGTA | 229160 | 0.0 | 37.841682 | 5 |
CAACGCA | 229705 | 0.0 | 37.81633 | 13 |
ATCAACG | 230795 | 0.0 | 37.746918 | 11 |
GTATCAA | 229780 | 0.0 | 37.730873 | 9 |
GGTATCA | 229845 | 0.0 | 37.722813 | 8 |
AACGCAG | 230455 | 0.0 | 37.719296 | 14 |
ACGCAGA | 230615 | 0.0 | 37.686188 | 15 |
TGGTATC | 229900 | 0.0 | 37.668552 | 7 |
TATCAAC | 230185 | 0.0 | 37.645374 | 10 |
GCAGTGG | 231685 | 0.0 | 37.614864 | 3 |
CGCAGAG | 232265 | 0.0 | 37.462383 | 16 |
CAGTGGT | 231495 | 0.0 | 37.45653 | 4 |
AGAGTAC | 230195 | 0.0 | 37.437824 | 19 |
CAGAGTA | 231700 | 0.0 | 37.205006 | 18 |
GCAGAGT | 233600 | 0.0 | 37.141266 | 17 |
GTACATG | 164540 | 0.0 | 37.00377 | 22 |