Basic Statistics
Measure | Value |
---|---|
Filename | SRR805191_1.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 13387400 |
Sequences flagged as poor quality | 0 |
Sequence length | 46 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT | 410100 | 3.063328204132244 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGCTGGTGAGATGGC | 35338 | 0.2639646234519026 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGGGGCTGGTGAGATGG | 25065 | 0.18722828928694146 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATAATTGCAATCCC | 18398 | 0.13742773055260918 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AAGCAGT | 187745 | 0.0 | 38.42872 | 1 |
TCAACGC | 194795 | 0.0 | 37.381863 | 12 |
AGCAGTG | 193105 | 0.0 | 37.378628 | 2 |
CAACGCA | 195015 | 0.0 | 37.34482 | 13 |
AGTGGTA | 194260 | 0.0 | 37.28714 | 5 |
GTGGTAT | 194450 | 0.0 | 37.267162 | 6 |
AACGCAG | 195535 | 0.0 | 37.259823 | 14 |
ATCAACG | 195670 | 0.0 | 37.233097 | 11 |
ACGCAGA | 195600 | 0.0 | 37.222904 | 15 |
GGTATCA | 195375 | 0.0 | 37.22278 | 8 |
GTATCAA | 195590 | 0.0 | 37.196175 | 9 |
TGGTATC | 195200 | 0.0 | 37.18033 | 7 |
TATCAAC | 195895 | 0.0 | 37.098446 | 10 |
AGAGTAC | 194065 | 0.0 | 37.020584 | 19 |
CGCAGAG | 196890 | 0.0 | 36.988167 | 16 |
CAGTGGT | 195030 | 0.0 | 36.902016 | 4 |
GCAGTGG | 195920 | 0.0 | 36.842587 | 3 |
CAGAGTA | 196165 | 0.0 | 36.740498 | 18 |
GCAGAGT | 198320 | 0.0 | 36.592373 | 17 |
ACATGGG | 143030 | 0.0 | 36.555965 | 24 |