##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041764_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25186829 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.51200554067366 34.0 31.0 34.0 31.0 34.0 2 32.66558481816032 34.0 31.0 34.0 31.0 34.0 3 32.695006902218616 34.0 31.0 34.0 31.0 34.0 4 36.15901485653474 37.0 35.0 37.0 35.0 37.0 5 36.123437015433744 37.0 35.0 37.0 35.0 37.0 6 36.19335649596859 37.0 37.0 37.0 35.0 37.0 7 36.10881016423306 37.0 36.0 37.0 35.0 37.0 8 36.13009958498547 37.0 36.0 37.0 35.0 37.0 9 37.89562211265261 39.0 38.0 39.0 35.0 39.0 10 37.82212782720683 39.0 38.0 39.0 35.0 39.0 11 37.90217803916484 39.0 38.0 39.0 35.0 39.0 12 37.82301980134141 39.0 38.0 39.0 35.0 39.0 13 37.82701319804887 39.0 38.0 39.0 35.0 39.0 14 38.67486105535556 40.0 39.0 40.0 36.0 40.0 15 38.64627091405591 40.0 39.0 40.0 36.0 40.0 16 38.62722333962723 40.0 39.0 40.0 36.0 40.0 17 38.639236721700854 40.0 39.0 40.0 36.0 40.0 18 38.615089061032656 40.0 39.0 40.0 36.0 40.0 19 38.61316960543147 40.0 39.0 40.0 36.0 40.0 20 38.55163395122109 40.0 39.0 40.0 35.0 40.0 21 38.469842472031715 40.0 38.0 40.0 35.0 40.0 22 38.42209751771452 40.0 38.0 40.0 35.0 40.0 23 38.33063272871706 40.0 38.0 40.0 35.0 40.0 24 38.278337261113734 40.0 38.0 40.0 34.0 40.0 25 38.249723059619775 40.0 38.0 40.0 34.0 40.0 26 38.121486472155745 40.0 38.0 40.0 34.0 40.0 27 38.02312283932209 40.0 38.0 40.0 34.0 40.0 28 37.90953033428702 40.0 38.0 40.0 34.0 40.0 29 37.80672894551355 40.0 38.0 40.0 33.0 40.0 30 37.805477180156345 40.0 38.0 40.0 33.0 40.0 31 37.715896510831115 40.0 37.0 40.0 33.0 40.0 32 37.637607814782875 40.0 37.0 40.0 33.0 40.0 33 37.550164294203135 40.0 37.0 40.0 33.0 40.0 34 37.445116493227474 40.0 37.0 40.0 33.0 40.0 35 37.349475235647965 40.0 37.0 40.0 33.0 40.0 36 37.41225205443686 40.0 37.0 40.0 33.0 40.0 37 37.377357824599514 40.0 37.0 40.0 33.0 40.0 38 37.308900695677096 40.0 37.0 40.0 33.0 40.0 39 37.23597746266511 40.0 37.0 40.0 33.0 40.0 40 37.16607044896362 40.0 37.0 40.0 33.0 40.0 41 37.05503690043713 40.0 36.0 40.0 32.0 40.0 42 36.95281363128324 40.0 36.0 40.0 32.0 40.0 43 36.58955051467574 40.0 35.0 40.0 31.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 9.0 11 14.0 12 42.0 13 45.0 14 83.0 15 102.0 16 214.0 17 386.0 18 777.0 19 1505.0 20 3233.0 21 6661.0 22 12650.0 23 23063.0 24 38491.0 25 61035.0 26 91494.0 27 133248.0 28 189327.0 29 257419.0 30 337835.0 31 428074.0 32 526118.0 33 664490.0 34 868381.0 35 1165541.0 36 1730214.0 37 3165838.0 38 1.0292064E7 39 5188475.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.536629482020146 17.835512362433555 12.07754259180463 24.550315563741666 2 18.849169143126353 21.55892272107775 33.99978615807492 25.59212197772098 3 19.97777092146058 23.53412571308599 29.92445376907113 26.563649596382298 4 14.109549082181008 15.862838470059092 35.002953329297625 35.02465911846227 5 14.56434233940287 35.78799062001811 33.810282350350654 15.837384690228372 6 33.42694310585902 35.366710910690664 14.74747376892899 16.458872214521328 7 29.359452116818673 31.028622142152155 20.624815454140734 18.987110286888438 8 28.526425458321885 32.59175261800522 18.74301445410218 20.1388074695707 9 26.666540674890037 14.10242631178383 19.589889620483785 39.64114339284235 10 17.413113020301203 27.60071146709258 30.61949163985669 24.366683872749523 11 35.919674525125814 22.3490976176477 20.611745130758617 21.11948272646787 12 23.53361751096178 25.777099610276466 28.113677986220498 22.575604892541257 13 31.186502278631423 19.96307276314934 24.28064684125183 24.569778116967402 14 22.617305259030424 20.585445670830577 26.215157930361144 30.582091139777855 15 25.147310127844996 27.502556991195675 23.53213657820919 23.81799630275014 16 24.259155449858337 27.119837118042927 24.106162788495528 24.514844643603208 17 23.642333062252497 26.336943805033975 25.057683918845044 24.963039213868488 18 25.00263927626618 24.17486139283353 26.663936139003447 24.158563191896846 19 26.475413002565745 24.22238226177658 26.310870653864367 22.991334081793305 20 25.776099087344424 24.444438797754174 26.884333077419154 22.89512903748225 21 24.92710773555496 25.216457379370784 26.416862559395625 23.439572325678633 22 24.53236173557219 24.841999761065594 26.388534261299824 24.237104242062387 23 24.003037460571157 25.11899771106557 26.914551252164376 23.963413576198896 24 23.772841749947958 25.14810816399317 26.93298946048349 24.146060625575373 25 24.315593677949693 24.798155416864905 27.133042432614285 23.75320847257112 26 23.74101162159 25.346799313244233 27.118943793996458 23.793245271169308 27 24.053877524637976 24.889746938767082 27.205326244125448 23.85104929246949 28 23.67179687446959 25.19853531383407 27.017017505458906 24.112650306237438 29 23.53289094073732 25.471678074282394 26.721783833923674 24.27364715105661 30 23.6125278017332 25.51361666051729 26.63459540698831 24.2392601307612 31 23.475535566624924 25.412234307065805 26.867518733700063 24.244711392609208 32 23.197795165084102 25.846401704636975 26.643020445328787 24.312782684950136 33 23.24018636883587 25.893819345023545 27.03949353846806 23.826500747672526 34 23.72842964868662 25.488071563117376 26.960936606986134 23.822562181209868 35 23.338408340327398 25.982377535496827 27.11811796554461 23.561096158631166 36 23.078578093336006 25.388432184138782 27.211658919032644 24.32133080349257 37 23.67003801868032 25.051402858216093 26.870536183812575 24.40802293929101 38 23.170606351438682 25.053646094155003 27.533354833988827 24.242392720417484 39 23.218949078504483 24.883620720972853 27.472060893413776 24.425369307108884 40 23.144255277232396 24.775290291604392 27.644583603596946 24.435870827566262 41 22.60585482991924 24.083178553362156 28.310574546720428 25.000392069998174 42 22.47265822942618 23.670581953766394 28.65294793560555 25.203811881201876 43 22.099614048278966 23.18205281022077 29.02078304497958 25.69755009652069 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2423.0 1 2490.5 2 2558.0 3 9942.0 4 17326.0 5 17326.0 6 26377.5 7 35429.0 8 34368.5 9 33308.0 10 44703.0 11 56098.0 12 56098.0 13 97680.5 14 139263.0 15 226156.0 16 313049.0 17 316034.0 18 319019.0 19 319019.0 20 295942.0 21 272865.0 22 226930.5 23 180996.0 24 223403.5 25 265811.0 26 265811.0 27 330303.5 28 394796.0 29 484654.0 30 574512.0 31 654858.0 32 735204.0 33 735204.0 34 820727.0 35 906250.0 36 987064.5 37 1067879.0 38 1135396.5 39 1202914.0 40 1202914.0 41 1248446.5 42 1293979.0 43 1355387.0 44 1416795.0 45 1490761.5 46 1564728.0 47 1564728.0 48 1653322.5 49 1741917.0 50 1767686.0 51 1793455.0 52 1832924.5 53 1872394.0 54 1872394.0 55 1817194.0 56 1761994.0 57 1711429.0 58 1660864.0 59 1574865.0 60 1488866.0 61 1488866.0 62 1332096.0 63 1175326.0 64 1011149.5 65 846973.0 66 751319.0 67 655665.0 68 655665.0 69 561705.0 70 467745.0 71 406813.0 72 345881.0 73 279654.5 74 213428.0 75 213428.0 76 173771.0 77 134114.0 78 116394.5 79 98675.0 80 80226.0 81 61777.0 82 61777.0 83 49391.5 84 37006.0 85 30144.0 86 23282.0 87 16248.0 88 9214.0 89 9214.0 90 5696.5 91 2179.0 92 1380.5 93 582.0 94 412.5 95 243.0 96 243.0 97 136.0 98 29.0 99 23.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2.5186829E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.11714075822371 #Duplication Level Percentage of deduplicated Percentage of total 1 72.92503888906035 28.52619011022312 2 13.542297285426905 10.594718982075104 3 5.069166634093244 5.948739142581496 4 2.4150232212222114 3.7787521311571233 5 1.4292888224132276 2.7954846025247018 6 0.8708728748002339 2.0439634095647814 7 0.5985289552212534 1.6388918972483641 8 0.43823024453275616 1.3713851327918896 9 0.32498476134720056 1.1441227188506566 >10 2.073606810503289 15.387235973494912 >50 0.17968704468700344 4.859938626303724 >100 0.11548880214896566 8.654521539565255 >500 0.009822397081532241 2.6512364764508844 >1k 0.007041421946487461 5.491477183932783 >5k 6.685840001976528E-4 1.6895968910403187 >10k+ 2.5325151522521467E-4 3.423745182194988 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 169073 0.6712754511494877 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 148647 0.5901775090464941 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 123576 0.4906373882952872 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 50061 0.198758644845685 No Hit CCTGTAGTCCCAGCTACTCGGGAGGCTGAGACAGGAGGATCGC 30742 0.12205585705131836 No Hit TCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCA 28860 0.11458369769374303 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.1910987286251874E-5 0.0 0.0 2.779230366792104E-5 1.5881316381669167E-5 2 4.4467685868673665E-4 0.0 0.0 2.6204172029754125E-4 1.9851645477086457E-5 3 6.074603515988456E-4 0.0 0.0 3.4938896039672163E-4 1.9851645477086457E-5 4 6.233416679805148E-4 0.0 0.0 3.6129994768297353E-4 2.3821974572503747E-5 5 0.002016927180471984 0.0 0.0 0.0010838998430489205 2.779230366792104E-5 6 0.0027911413540783556 0.0 0.0 0.0013697635379189654 5.1614278240424784E-5 7 0.003084945707139235 0.0 0.0 0.0014650514362089806 6.352526552667667E-5 8 0.003926655475367701 0.0 0.0 0.0018382623711782058 6.749559462209396E-5 9 0.004172815879283573 0.0 0.0 0.0019851645477086456 1.0322855648084957E-4 10 0.007067185789842778 0.0 0.0 0.0029380435306087956 1.0322855648084957E-4 11 0.007706408774204963 0.0 0.0 0.0031802336054292503 1.0719888557626687E-4 12 0.008067708721887936 0.0 0.0 0.0032914028201009343 1.389615183396052E-4 13 0.008687080060773034 0.0 0.0 0.0034978599330626335 1.6675382200752624E-4 14 0.010036991953214912 0.0 0.0 0.003827397247982269 1.9851645477086456E-4 15 0.010958108303351723 3.970329095417292E-6 3.970329095417292E-6 0.0040537060064210545 2.0248678386628185E-4 16 0.011517924705805562 3.970329095417292E-6 3.970329095417292E-6 0.005177309140424148 2.1042744205711643E-4 17 0.011756144451530599 7.940658190834583E-6 3.970329095417292E-6 0.006622508931156042 2.1042744205711643E-4 18 0.01191495761534729 7.940658190834583E-6 3.970329095417292E-6 0.007940658190834582 2.3821974572503748E-4 19 0.012331842170366107 7.940658190834583E-6 3.970329095417292E-6 0.009695543651009025 2.4616040391587204E-4 20 0.014924467069673599 7.940658190834583E-6 3.970329095417292E-6 0.016290260278497146 2.6204172029754125E-4 21 0.02273410440035941 7.940658190834583E-6 3.970329095417292E-6 0.03373985665285614 2.739527075837931E-4 22 0.023067612044374464 7.940658190834583E-6 3.970329095417292E-6 0.048227587522033835 2.739527075837931E-4 23 0.023341564751958255 7.940658190834583E-6 3.970329095417292E-6 0.05619603801653634 3.2953731491963515E-4 24 0.02376241963607249 7.940658190834583E-6 3.970329095417292E-6 0.06630846622256419 3.3747797311046974E-4 25 0.024139600900137132 7.940658190834583E-6 3.970329095417292E-6 0.07156518194489668 3.4144830220588705E-4 26 0.026613115926582102 7.940658190834583E-6 3.970329095417292E-6 0.0815386486325849 3.4938896039672163E-4 27 0.027272190556421372 7.940658190834583E-6 3.970329095417292E-6 0.12563312356628936 3.4938896039672163E-4 28 0.027855828933447718 7.940658190834583E-6 3.970329095417292E-6 0.22842097351754762 3.4938896039672163E-4 29 0.02795508716083315 7.940658190834583E-6 3.970329095417292E-6 0.4025079933643096 3.5335928949213895E-4 30 0.028078167362791083 7.940658190834583E-6 3.970329095417292E-6 0.5827291716634913 3.5335928949213895E-4 31 0.02843946731047406 7.940658190834583E-6 3.970329095417292E-6 0.6863785830284551 3.573296185875562E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 78210 0.0 19.431976 1 TAGCGCA 6985 0.0 14.56693 4 GTATCAA 131635 0.0 14.468607 1 TAGTCCC 10630 0.0 13.67921 5 CTACTCG 10385 0.0 13.574386 14 ATAGCGC 7670 0.0 13.241851 3 TACTCGG 10665 0.0 13.113924 15 TGAACCG 8710 0.0 12.998852 14 TAAACGC 4145 0.0 12.720145 28 AGCGCAC 7990 0.0 12.711514 5 TATACAG 5880 0.0 12.522108 5 AACCGGC 9030 0.0 12.4972315 16 ACGCTAC 2670 0.0 12.402622 27 GCCTAAG 10365 0.0 12.386879 1 ACCGATT 3015 0.0 12.333332 20 TCGGAAA 9030 0.0 12.312846 28 GAACCGG 9285 0.0 12.293484 15 TTAGGCA 12020 0.0 12.235856 4 CGGAAAC 9110 0.0 12.225027 29 ACGACCG 3150 0.0 12.157143 17 >>END_MODULE