##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041763_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25737091 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.1470564019842 33.0 31.0 34.0 30.0 34.0 2 32.243483966389206 34.0 31.0 34.0 30.0 34.0 3 32.36421241235072 34.0 31.0 34.0 30.0 34.0 4 35.918565893868895 37.0 35.0 37.0 35.0 37.0 5 35.86960674770898 37.0 35.0 37.0 35.0 37.0 6 35.928150426946075 37.0 35.0 37.0 35.0 37.0 7 35.865253108830366 37.0 35.0 37.0 35.0 37.0 8 35.85417194196501 37.0 35.0 37.0 35.0 37.0 9 37.57830572227452 39.0 37.0 39.0 35.0 39.0 10 37.46679580065983 39.0 37.0 39.0 34.0 39.0 11 37.552555609334405 39.0 37.0 39.0 35.0 39.0 12 37.46554946710955 39.0 37.0 39.0 34.0 39.0 13 37.4836507746738 39.0 37.0 39.0 34.0 39.0 14 38.34147802484748 40.0 38.0 40.0 34.0 40.0 15 38.33028829870477 40.0 38.0 40.0 34.0 40.0 16 38.29956349767734 40.0 38.0 40.0 34.0 40.0 17 38.274190194999115 40.0 38.0 40.0 34.0 40.0 18 38.22416717569208 40.0 38.0 40.0 34.0 40.0 19 38.23033729802641 40.0 38.0 40.0 34.0 40.0 20 38.16763094943403 40.0 38.0 40.0 34.0 40.0 21 38.11439591210988 40.0 38.0 40.0 34.0 40.0 22 38.06926081894803 40.0 38.0 40.0 34.0 40.0 23 37.99860407689432 40.0 38.0 40.0 34.0 40.0 24 37.93696268937309 40.0 38.0 40.0 33.0 40.0 25 37.90916055742275 40.0 38.0 40.0 33.0 40.0 26 37.774533493315154 40.0 38.0 40.0 33.0 40.0 27 37.70009602095279 40.0 38.0 40.0 33.0 40.0 28 37.56265702289353 40.0 37.0 40.0 33.0 40.0 29 37.50259394117229 40.0 37.0 40.0 32.0 40.0 30 37.413442956704 40.0 37.0 40.0 32.0 40.0 31 37.354792427784474 40.0 37.0 40.0 32.0 40.0 32 37.224823232742196 40.0 37.0 40.0 32.0 40.0 33 37.3165692268796 40.0 37.0 40.0 32.0 40.0 34 37.24622872103145 40.0 37.0 40.0 32.0 40.0 35 37.397625240552635 40.0 37.0 40.0 32.0 40.0 36 37.44605180904089 40.0 37.0 40.0 33.0 40.0 37 37.421837534008795 40.0 37.0 40.0 32.0 40.0 38 37.38562594350698 40.0 37.0 40.0 32.0 40.0 39 37.35712272222218 40.0 37.0 40.0 32.0 40.0 40 37.33902965179709 40.0 37.0 40.0 32.0 40.0 41 37.31645577194408 40.0 37.0 40.0 32.0 40.0 42 37.28921932163973 40.0 37.0 40.0 32.0 40.0 43 36.98013326370101 40.0 36.0 40.0 31.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 5.0 12 13.0 13 18.0 14 19.0 15 34.0 16 87.0 17 156.0 18 465.0 19 1112.0 20 2691.0 21 5921.0 22 12358.0 23 23749.0 24 41276.0 25 68372.0 26 104706.0 27 155363.0 28 220390.0 29 304125.0 30 401973.0 31 518845.0 32 652099.0 33 821628.0 34 1056074.0 35 1389041.0 36 1957404.0 37 3238181.0 38 1.0479713E7 39 4281270.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.965838680059065 19.180905099181565 12.129968379099253 25.723287841660113 2 17.889982205059614 22.07227693292921 34.66627599832475 25.37146486368642 3 19.162647402536674 23.791433927012186 30.611971648233283 26.433947022217858 4 14.522476530078709 16.393496063715983 35.75042727245282 33.33360013375249 5 14.294801226758688 36.13819448359568 34.99063277974967 14.576371509895973 6 33.12648270933183 36.33122329170767 15.928462933126358 14.613831065834129 7 28.581466335880773 31.314269355460567 21.615496483266117 18.488767825392543 8 26.85931366524678 34.160457372591175 20.302982182407483 18.677246779754558 9 26.0318464118575 15.15058947415619 19.919119841477034 38.89844427250927 10 16.28084930033468 27.781717832835113 32.88606315298026 23.051369713849944 11 35.60682518471104 22.432671198155223 21.97810545100066 19.982398166133073 12 22.19436532279425 25.098057896286726 29.764175757081485 22.94340102383754 13 29.749197374326414 20.44219371956217 25.003758194739255 24.804850711372158 14 21.919586794016467 20.422191459011433 26.287629009820883 31.37059273715122 15 24.231133969258607 28.26346225375665 23.187538949137647 24.317864827847092 16 24.27389715488825 27.456887027364512 24.439246067086604 23.82996975066063 17 23.24257624919615 27.1664734759651 25.895615009481844 23.695335265356913 18 24.064308588721232 26.152936242872205 26.66593516726502 23.116820001141544 19 25.02221016353402 25.88018591533907 26.229001560432764 22.868602360694144 20 24.609210885565894 25.966030892924145 26.327167277762666 23.097590943747296 21 24.40494537630535 26.146202770157668 26.042947122501143 23.405904731035843 22 24.426412448866113 25.807399911668337 25.986884065491317 23.779303573974232 23 24.080623563867416 25.862526576915783 26.092482635275292 23.96436722394151 24 23.833808568342086 25.816604526129233 26.19473195319549 24.154854952333192 25 24.08809527075146 25.753703089443945 26.413723291416268 23.744478348388323 26 23.852241109921863 25.88620446654208 26.389058499268625 23.87249592426743 27 23.75954998177533 26.109112331304264 26.31011795388997 23.821219733030436 28 23.869177755947632 25.908095052389562 26.36506977420253 23.85765741746027 29 23.640379559601353 26.121056183078345 26.28078285925942 23.957781398060877 30 23.9174815832916 26.228410973097155 26.115810835031823 23.738296608579425 31 23.704139679189073 25.91846141430669 26.373404049432004 24.00399485707223 32 23.465542395603293 26.248331639344947 26.390667072669554 23.895458892382205 33 23.530639107582125 26.16578151742169 26.48357967106694 23.81999970392924 34 23.64669340447217 25.844264994827892 26.53088105411758 23.978160546582362 35 23.336973086818553 26.240385908415213 26.811219651824675 23.61142135294156 36 23.30271902135327 25.892153079771134 26.677164097527573 24.127963801348024 37 23.351430820211966 25.449352454012768 26.942085257420896 24.257131468354366 38 22.918712919031915 25.222112320308458 27.425865650473085 24.433309110186542 39 22.92384947467451 24.615198353224923 27.640007955833077 24.82094421626749 40 23.015390511693802 24.106170351575475 28.248887957073315 24.629551179657405 41 22.624196339827215 23.618314128818987 28.550060300132596 25.207429231221194 42 22.37507339116142 23.045502694923837 28.994539437265853 25.584884476648895 43 21.857769395927455 22.20882694163066 29.725962425201825 26.207441237240058 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1067.0 1 1338.5 2 1610.0 3 4151.0 4 6692.0 5 6692.0 6 9875.0 7 13058.0 8 13943.5 9 14829.0 10 19363.5 11 23898.0 12 23898.0 13 34222.0 14 44546.0 15 65159.0 16 85772.0 17 89966.0 18 94160.0 19 94160.0 20 96628.0 21 99096.0 22 104624.5 23 110153.0 24 154078.0 25 198003.0 26 198003.0 27 286539.5 28 375076.0 29 490849.5 30 606623.0 31 778869.5 32 951116.0 33 951116.0 34 1136547.5 35 1321979.0 36 1458104.5 37 1594230.0 38 1690829.0 39 1787428.0 40 1787428.0 41 1758186.5 42 1728945.0 43 1703158.5 44 1677372.0 45 1674552.5 46 1671733.0 47 1671733.0 48 1702976.5 49 1734220.0 50 1777379.0 51 1820538.0 52 1828581.0 53 1836624.0 54 1836624.0 55 1807011.0 56 1777398.0 57 1680258.5 58 1583119.0 59 1479211.0 60 1375303.0 61 1375303.0 62 1210581.5 63 1045860.0 64 886103.0 65 726346.0 66 620313.0 67 514280.0 68 514280.0 69 422465.5 70 330651.0 71 283404.0 72 236157.0 73 191444.5 74 146732.0 75 146732.0 76 117111.5 77 87491.0 78 70398.0 79 53305.0 80 41934.5 81 30564.0 82 30564.0 83 23970.0 84 17376.0 85 13435.0 86 9494.0 87 6325.0 88 3156.0 89 3156.0 90 1948.5 91 741.0 92 476.5 93 212.0 94 165.5 95 119.0 96 119.0 97 65.5 98 12.0 99 9.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2.5737091E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.133294249104466 #Duplication Level Percentage of deduplicated Percentage of total 1 72.99199611466743 30.024012540141054 2 12.927228102649774 10.634789547431712 3 4.861470661823576 5.999049096485334 4 2.477346995882245 4.076057717550375 5 1.5014402527394866 3.087959185669154 6 0.9983134084867817 2.463835151046793 7 0.6798755038233736 1.957586340606748 8 0.5191099989138084 1.7082163466379185 9 0.3776695787819989 1.3981314521677775 >10 2.339256905526075 18.064569815236762 >50 0.19798377731844574 5.646855196411725 >100 0.11618326557179602 8.948697528867482 >500 0.008305193100366974 2.322679241661987 >1k 0.003640787429114729 2.5550048948020176 >5k 7.555927826722338E-5 0.2374824348207673 >10k+ 1.0389400761404296E-4 0.8750735104626048 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 43454 0.1688380400100384 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 36677 0.14250639281649974 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 28446 0.11052531150470735 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.885442997423446E-6 0.0 0.0 0.0 7.770885994846893E-5 2 2.7198100981964123E-5 0.0 0.0 3.885442997423446E-6 8.159430294589238E-5 3 4.2739872971657905E-5 0.0 0.0 1.5541771989693785E-5 8.159430294589238E-5 4 4.2739872971657905E-5 0.0 0.0 2.7198100981964123E-5 8.547974594331581E-5 5 1.5541771989693786E-4 0.0 0.0 3.8854429974234465E-5 9.32506319381627E-5 6 2.4089746584025367E-4 0.0 0.0 3.8854429974234465E-5 1.437613909046675E-4 7 2.4866835183510056E-4 0.0 0.0 4.2739872971657905E-5 1.4764683390209096E-4 8 3.0694999679645223E-4 0.0 0.0 4.2739872971657905E-5 1.515322768995144E-4 9 3.22491768786146E-4 0.0 0.0 1.0879240392785649E-4 2.0592847886344266E-4 10 5.789310066160935E-4 0.0 0.0 2.758664528170647E-4 2.2147025085313645E-4 11 6.216708795877514E-4 0.0 0.0 3.3414809777841637E-4 2.4089746584025367E-4 12 6.333272085800217E-4 0.0 0.0 3.9242974273976804E-4 3.458044267706867E-4 13 6.644107525594093E-4 3.885442997423446E-6 0.0 4.118569577268853E-4 4.040860717320384E-4 14 7.382341695104548E-4 7.770885994846893E-6 0.0 4.390550587088494E-4 4.584822736959666E-4 15 8.081721434640768E-4 7.770885994846893E-6 0.0 5.089930326624715E-4 5.944727786057872E-4 16 8.664537884254285E-4 7.770885994846893E-6 0.0 7.732031564872658E-4 6.333272085800217E-4 17 8.819955604151223E-4 7.770885994846893E-6 0.0 0.0010995803682708352 6.488689805697155E-4 18 8.897664464099692E-4 7.770885994846893E-6 0.0 0.001810616436799326 7.343487265130313E-4 19 9.05308218399663E-4 7.770885994846893E-6 0.0 0.002420630987394807 7.537759415001486E-4 20 0.0010879240392785649 1.5541771989693785E-5 0.0 0.004681958811895252 8.237139154537706E-4 21 0.001620229729925577 1.5541771989693785E-5 0.0 0.008066179662651074 8.470265734383112E-4 22 0.0016474278309075413 1.5541771989693785E-5 0.0 0.012309083415837477 8.664537884254285E-4 23 0.0016590841598998116 1.5541771989693785E-5 0.0 0.014760797947211673 9.40277205376474E-4 24 0.001690167703879199 1.5541771989693785E-5 0.0 0.019683654224947177 9.519335343687443E-4 25 0.0017095949188663164 1.5541771989693785E-5 0.0 0.0232504908965819 9.597044203635912E-4 26 0.0018611271957658308 1.5541771989693785E-5 0.0 0.03313117243902972 0.001017986065324943 27 0.001915523397729759 1.5541771989693785E-5 0.0 0.1080463988723512 0.0010568404952991774 28 0.00195049238470657 1.5541771989693785E-5 0.0 0.2726182224712187 0.0010684968242914478 29 0.00195049238470657 1.5541771989693785E-5 0.0 0.46713904069422607 0.0010801531532837181 30 0.001954377827703993 1.5541771989693785E-5 0.0 0.6444862008686219 0.0010801531532837181 31 0.0019738050426911105 1.5541771989693785E-5 0.0 0.7746563121683021 0.0010879240392785649 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 19410 0.0 25.295723 1 GTATCAA 39895 0.0 18.05715 1 CTACTCG 6960 0.0 12.838361 14 AACGCAG 55585 0.0 12.750472 6 TATCAAC 56100 0.0 12.709268 2 ATCAACG 56230 0.0 12.587763 3 TCAACGC 56335 0.0 12.584005 4 CAACGCA 56820 0.0 12.4668255 5 TAGTCCC 7615 0.0 12.3657255 5 TACTCGG 7200 0.0 12.281943 15 ACGCAGA 58575 0.0 12.068031 7 CGCAGAG 60100 0.0 11.764891 8 ATCTCCG 7985 0.0 11.746399 10 ACGAGAC 7800 0.0 11.645513 22 TAGCGCA 4940 0.0 11.459514 4 AGAGTAC 61550 0.0 11.457677 11 CGTATAC 635 0.0 11.362204 3 CTGTCTC 119675 0.0 11.227532 37 AGACCGA 8110 0.0 11.223181 25 CCCACGA 8245 0.0 11.196482 19 >>END_MODULE