##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041759_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 25457814 Sequences flagged as poor quality 0 Sequence length 43 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.041331239202236 33.0 31.0 34.0 30.0 34.0 2 32.13522791077035 33.0 31.0 34.0 30.0 34.0 3 32.22716636235931 34.0 31.0 34.0 30.0 34.0 4 35.81329154969865 37.0 35.0 37.0 35.0 37.0 5 35.77632525714895 37.0 35.0 37.0 35.0 37.0 6 35.858961338942926 37.0 35.0 37.0 35.0 37.0 7 35.78955204087829 37.0 35.0 37.0 33.0 37.0 8 35.79712075828663 37.0 35.0 37.0 33.0 37.0 9 37.48117799902222 39.0 37.0 39.0 35.0 39.0 10 37.376177506835425 39.0 37.0 39.0 34.0 39.0 11 37.46631871063242 39.0 37.0 39.0 34.0 39.0 12 37.38302860567683 39.0 37.0 39.0 34.0 39.0 13 37.400683774341346 39.0 37.0 39.0 34.0 39.0 14 38.20117889933519 40.0 38.0 40.0 34.0 40.0 15 38.18159838861263 40.0 38.0 40.0 34.0 40.0 16 38.15396439772873 40.0 38.0 40.0 34.0 40.0 17 38.17908957147695 40.0 38.0 40.0 34.0 40.0 18 38.158403899093614 40.0 38.0 40.0 34.0 40.0 19 38.17239901273534 40.0 38.0 40.0 34.0 40.0 20 38.113533078684604 40.0 38.0 40.0 34.0 40.0 21 38.05270939602277 40.0 38.0 40.0 34.0 40.0 22 37.99102271703297 40.0 38.0 40.0 34.0 40.0 23 37.90386660849985 40.0 38.0 40.0 33.0 40.0 24 37.83550382605514 40.0 38.0 40.0 33.0 40.0 25 37.78972927526299 40.0 37.0 40.0 33.0 40.0 26 37.61303225013742 40.0 37.0 40.0 33.0 40.0 27 37.50498856657528 40.0 37.0 40.0 33.0 40.0 28 37.33474775171191 40.0 37.0 40.0 32.0 40.0 29 37.23943088750668 40.0 36.0 40.0 32.0 40.0 30 37.092959827579854 39.0 36.0 40.0 32.0 40.0 31 36.948965924568384 39.0 36.0 40.0 31.0 40.0 32 36.751107577422005 39.0 35.0 40.0 31.0 40.0 33 36.75899085443864 39.0 35.0 40.0 31.0 40.0 34 36.62877366454166 39.0 35.0 40.0 31.0 40.0 35 36.67227457157162 39.0 35.0 40.0 31.0 40.0 36 36.63842225416526 39.0 35.0 40.0 31.0 40.0 37 36.54688344411661 40.0 35.0 40.0 30.0 40.0 38 36.439098423768826 40.0 35.0 40.0 30.0 40.0 39 36.32229593632823 40.0 35.0 40.0 30.0 40.0 40 36.2047677385026 39.0 35.0 40.0 30.0 40.0 41 36.08109737937436 39.0 35.0 40.0 30.0 40.0 42 35.94467081894777 39.0 35.0 40.0 29.0 40.0 43 35.550158548569804 39.0 35.0 40.0 27.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 3.0 10 8.0 11 24.0 12 40.0 13 55.0 14 89.0 15 98.0 16 177.0 17 402.0 18 954.0 19 2272.0 20 5107.0 21 10290.0 22 20122.0 23 35772.0 24 60044.0 25 94730.0 26 140416.0 27 203169.0 28 284356.0 29 383402.0 30 495835.0 31 612579.0 32 746708.0 33 929410.0 34 1177132.0 35 1518224.0 36 2182622.0 37 3700392.0 38 9540848.0 39 3312534.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.35221790841901 20.046226278501365 13.316893587171311 23.28466222590832 2 18.354694554685647 23.619180342821263 33.908115598613456 24.118009503879634 3 20.058635042270325 24.77580360984647 30.906491028648414 24.259070319234795 4 14.577583134199976 17.116944919151344 35.164822085666906 33.14064986098178 5 13.999823394106029 37.155872849098515 33.76769898625231 15.076604770543142 6 31.930443831508864 36.565500085749704 15.484483467433613 16.01957261530782 7 27.137608908604644 32.531524505599734 21.660481139503965 18.670385446291657 8 27.359356148960785 33.28363150111789 20.047986052533812 19.309026297387515 9 25.744083918595685 14.880417462394846 20.957549615218337 38.417949003791136 10 16.77694322065516 28.863012354477885 31.692556163698892 22.667488261168064 11 33.987596107034165 23.57943616054387 21.946601542457653 20.486366189964308 12 22.0903255872637 26.89465796238436 29.521705987796125 21.49331046255582 13 29.965267245648036 21.349083625169072 25.47480706709539 23.2108420620875 14 21.501641892740672 22.003220700724736 27.833536689363825 28.661600717170764 15 23.534389087766925 29.362301099379547 24.82747733171434 22.27583248113919 16 22.259307103115766 28.481125677169295 26.117152085406865 23.142415134308074 17 21.70307709845001 28.13396704053223 27.381683281997425 22.781272579020335 18 22.758489790207438 26.19159681188652 28.834089996886615 22.215823401019428 19 23.64483847670503 26.27895702278287 29.332027486727654 20.74417701378445 20 23.07376037864052 26.620325688607828 29.219496222260087 21.086417710491563 21 22.653366860171108 26.959467140422976 29.028592164276162 21.358573835129757 22 22.341835791556967 26.962067520801273 28.880099446087552 21.815997241554204 23 21.958157915679642 27.133940093992358 29.113803722503434 21.794098267824566 24 21.739525632483605 27.159739638289448 29.219091631355308 21.88164309787164 25 21.905930336359596 27.054695269593847 29.42111997518719 21.618254418859372 26 21.562986515652916 27.46070813464188 29.533580534448088 21.442724815257115 27 21.56739773493514 27.421254629325205 29.48127046572027 21.53007717001939 28 21.557082630896744 27.585879918833566 29.3882577663581 21.46877968391159 29 21.368366506252265 27.78920059672052 29.1857344860796 21.656698410947616 30 21.48050103594912 27.854512567339835 28.998251774484647 21.666734622226404 31 21.404858249023267 27.68597885112995 29.134088260680986 21.775074639165798 32 21.12324333896068 28.040891492097476 28.945136452014303 21.89072871692754 33 21.163160356187692 27.989873757424732 29.097451179429623 21.74951470695795 34 21.379938591742402 27.830205688516696 28.959776357860108 21.8300793618808 35 21.073360815661548 28.166463939126903 29.115308172178487 21.64486707303306 36 20.97314404135406 27.864847311713408 29.132387407654093 22.029621239278438 37 21.15046877159209 27.477783442050445 29.290692437300393 22.08105534905707 38 20.82515804381319 27.45988716863121 29.596351045694654 22.118603741860948 39 20.856130852397616 27.08228994052671 29.688731326263913 22.37284788081176 40 20.868154665596975 26.80708170780099 29.93035065775875 22.39441296884328 41 20.61072486427939 26.226690162792455 30.09350292212835 23.069082050799807 42 20.409462493519673 25.807439711830714 30.285844652647707 23.4972531420019 43 20.039175398170478 25.027290245737515 30.767252836398285 24.166281519693715 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 18262.0 1 15864.0 2 13466.0 3 27508.5 4 41551.0 5 41551.0 6 60355.5 7 79160.0 8 81962.5 9 84765.0 10 111054.0 11 137343.0 12 137343.0 13 216475.5 14 295608.0 15 451286.5 16 606965.0 17 591031.0 18 575097.0 19 575097.0 20 544960.5 21 514824.0 22 455901.5 23 396979.0 24 467555.5 25 538132.0 26 538132.0 27 621238.5 28 704345.0 29 749446.0 30 794547.0 31 839423.5 32 884300.0 33 884300.0 34 926716.0 35 969132.0 36 1012619.5 37 1056107.0 38 1108106.5 39 1160106.0 40 1160106.0 41 1205742.5 42 1251379.0 43 1316315.0 44 1381251.0 45 1456731.0 46 1532211.0 47 1532211.0 48 1606615.5 49 1681020.0 50 1711903.5 51 1742787.0 52 1749087.0 53 1755387.0 54 1755387.0 55 1681795.5 56 1608204.0 57 1531098.0 58 1453992.0 59 1346220.5 60 1238449.0 61 1238449.0 62 1089586.5 63 940724.0 64 801905.0 65 663086.0 66 569492.0 67 475898.0 68 475898.0 69 394563.5 70 313229.0 71 268055.0 72 222881.0 73 180205.5 74 137530.0 75 137530.0 76 110031.0 77 82532.0 78 65958.5 79 49385.0 80 38994.0 81 28603.0 82 28603.0 83 22255.0 84 15907.0 85 12472.0 86 9037.0 87 5876.5 88 2716.0 89 2716.0 90 1676.0 91 636.0 92 406.5 93 177.0 94 130.0 95 83.0 96 83.0 97 48.5 98 14.0 99 10.5 100 7.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2.5457814E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 38.99910304288866 #Duplication Level Percentage of deduplicated Percentage of total 1 72.59805887747753 28.312591788764447 2 13.121609466562312 10.23461999350014 3 5.092921623959121 5.95858125606413 4 2.474213852331102 3.8596848390881267 5 1.4986450868702008 2.92229070837849 6 0.9900135943838648 2.316578530874216 7 0.6684948489418114 1.8249489648265398 8 0.4878161808086206 1.521951480107504 9 0.3761284638241819 1.3201805446238424 >10 2.3827953270264586 17.573996432104916 >50 0.18407162672273164 4.942644855323567 >100 0.11102152371221773 8.27888865074073 >500 0.008893088555177366 2.364681877236453 >1k 0.004754846845098408 3.4271745510266434 >5k 3.0085284616617234E-4 0.7851952336304462 >10k+ 2.607391333417396E-4 4.355990293709858 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 261868 1.0286350587682038 No Hit GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 259486 1.0192784030867694 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 191102 0.7506614668486461 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 93782 0.3683819828363897 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31572 0.12401693248289111 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 2.7496469256944055E-5 2 1.217700781378951E-4 0.0 0.0 3.1424536293650353E-5 2.7496469256944055E-5 3 1.5319461443154546E-4 0.0 0.0 4.3208737403769235E-5 2.7496469256944055E-5 4 1.5712268146825175E-4 0.0 0.0 5.892100555059441E-5 2.7496469256944055E-5 5 4.595838432946364E-4 0.0 0.0 1.2569814517460141E-4 2.7496469256944055E-5 6 6.402749269831259E-4 0.0 0.0 1.6105074850495806E-4 5.892100555059441E-5 7 6.913397984603078E-4 0.0 0.0 1.7676301665178323E-4 5.892100555059441E-5 8 8.131098765982028E-4 0.0 0.0 2.0818755294543356E-4 5.892100555059441E-5 9 8.484624799285595E-4 0.0 0.0 2.553243573859091E-4 7.070520666071329E-5 10 0.0013983918650674406 0.0 0.0 3.9673477070733567E-4 7.463327369741959E-5 11 0.0015162338761686295 0.0 0.0 4.5172770922122376E-4 8.248940777083217E-5 12 0.0015830110157926363 0.0 0.0 4.752961114414615E-4 9.820167591765734E-5 13 0.0016419320213432308 0.0 0.0 5.106487147718182E-4 1.1391394406448252E-4 14 0.0018265511720684266 0.0 0.0 5.852819884692378E-4 1.3355427924801398E-4 15 0.0019601054513164406 0.0 0.0 6.756275303134825E-4 1.7283494961507694E-4 16 0.002097587797601161 0.0 0.0 0.001001657094360105 1.846191507251958E-4 17 0.0021093719987112796 0.0 0.0 0.001484809339874979 1.846191507251958E-4 18 0.002152580736115049 0.0 0.0 0.002022954523903741 1.885472177619021E-4 19 0.002235070143885881 0.0 0.0 0.0027889275960614685 1.885472177619021E-4 20 0.0026003803782995664 0.0 0.0 0.005000429337727112 2.1997175405555244E-4 21 0.003731663684870979 0.0 0.0 0.01046044251874886 2.1997175405555244E-4 22 0.0037748724222747485 0.0 0.0 0.015892959230513665 2.2782788812896504E-4 23 0.00379451275745828 0.0 0.0 0.02025311364125765 2.474682233124965E-4 24 0.003837721494862049 0.0 0.0 0.025123916766773453 2.5139629034920283E-4 25 0.0038966425004126433 3.928067036706294E-6 0.0 0.02826637039613849 2.5139629034920283E-4 26 0.004206959796312441 3.928067036706294E-6 0.0 0.036020374726596714 2.592524244226154E-4 27 0.004332657941487042 3.928067036706294E-6 0.0 0.08818117690701958 2.631804914593217E-4 28 0.0043876508800009305 3.928067036706294E-6 0.0 0.1910336841961372 2.631804914593217E-4 29 0.0043994350811110495 3.928067036706294E-6 0.0 0.3636368778560484 2.631804914593217E-4 30 0.0044112192822211675 3.928067036706294E-6 0.0 0.5331918914954756 2.6710855849602797E-4 31 0.004446571885551524 3.928067036706294E-6 0.0 0.6367553789182371 2.749646925694406E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 97185 0.0 16.06246 1 GTATCAA 152865 0.0 12.7690115 1 TACACCG 1515 0.0 12.21122 5 CTACTCG 5640 0.0 11.939716 14 TATCTCG 4770 0.0 11.790357 36 TATACAC 14430 0.0 11.5 37 TACTCGG 5855 0.0 11.4380865 15 AACGCAG 164265 0.0 11.391806 6 TATACAG 4800 0.0 11.331249 5 ACGGACT 4950 0.0 11.286868 27 TATACTG 3290 0.0 11.077508 5 CTGTCTC 102720 0.0 11.004187 37 TAGTCCC 6610 0.0 10.831315 5 TACACAG 6745 0.0 10.751669 5 TGTCTCT 67375 0.0 10.686752 37 TTAGGCA 6805 0.0 10.656869 4 ACGAGAC 5740 0.0 10.539199 22 TAGCGCA 4375 0.0 10.486857 4 CGAGACG 5840 0.0 10.39041 23 TGAACCG 5565 0.0 10.371967 14 >>END_MODULE