##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041756_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 22745894 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.057359715120455 33.0 31.0 34.0 30.0 34.0 2 32.165660096718995 34.0 31.0 34.0 30.0 34.0 3 32.269524468899746 34.0 31.0 34.0 30.0 34.0 4 35.84439785044281 37.0 35.0 37.0 35.0 37.0 5 35.797768423610876 37.0 35.0 37.0 35.0 37.0 6 35.869781948337575 37.0 35.0 37.0 35.0 37.0 7 35.804635860872295 37.0 35.0 37.0 35.0 37.0 8 35.799552965471484 37.0 35.0 37.0 33.0 37.0 9 37.502709587937055 39.0 37.0 39.0 35.0 39.0 10 37.381883385194705 39.0 37.0 39.0 34.0 39.0 11 37.47282920600966 39.0 37.0 39.0 34.0 39.0 12 37.380689411460374 39.0 37.0 39.0 34.0 39.0 13 37.400244852983136 39.0 37.0 39.0 34.0 39.0 14 38.23747578354141 40.0 38.0 40.0 34.0 40.0 15 38.22154451260522 40.0 38.0 40.0 34.0 40.0 16 38.18693338674664 40.0 38.0 40.0 34.0 40.0 17 38.177449169507256 40.0 38.0 40.0 34.0 40.0 18 38.1309359394711 40.0 38.0 40.0 34.0 40.0 19 38.13221661017149 40.0 38.0 40.0 34.0 40.0 20 38.06553143173885 40.0 38.0 40.0 34.0 40.0 21 38.00341925448171 40.0 38.0 40.0 34.0 40.0 22 37.952169389341215 40.0 38.0 40.0 33.0 40.0 23 37.867922579785166 40.0 38.0 40.0 33.0 40.0 24 37.8004007668373 40.0 38.0 40.0 33.0 40.0 25 37.76602401294932 40.0 38.0 40.0 33.0 40.0 26 37.60425455249198 40.0 37.0 40.0 33.0 40.0 27 37.51400626416355 40.0 37.0 40.0 33.0 40.0 28 37.347810378435774 40.0 37.0 40.0 32.0 40.0 29 37.27165083069498 40.0 37.0 40.0 32.0 40.0 30 37.16085478987988 40.0 37.0 40.0 32.0 40.0 31 37.072585759873846 40.0 36.0 40.0 31.0 40.0 32 36.91211288507719 39.0 36.0 40.0 31.0 40.0 33 36.98441771512696 40.0 36.0 40.0 31.0 40.0 34 36.88499150659895 40.0 36.0 40.0 31.0 40.0 35 37.000467293129915 40.0 36.0 40.0 31.0 40.0 36 37.02362329658267 40.0 36.0 40.0 31.0 40.0 37 36.97331047968482 40.0 36.0 40.0 31.0 40.0 38 36.9091962707643 40.0 36.0 40.0 31.0 40.0 39 36.844192362806226 40.0 36.0 40.0 31.0 40.0 40 36.79479478801756 40.0 36.0 40.0 31.0 40.0 41 36.73440239368037 40.0 36.0 40.0 31.0 40.0 42 36.66534513877538 40.0 36.0 40.0 30.0 40.0 43 36.30925678278462 39.0 35.0 40.0 30.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 4.0 11 13.0 12 24.0 13 25.0 14 39.0 15 64.0 16 128.0 17 318.0 18 752.0 19 1846.0 20 4001.0 21 8755.0 22 17374.0 23 31521.0 24 52614.0 25 81237.0 26 119883.0 27 170951.0 28 234265.0 29 312091.0 30 402505.0 31 502788.0 32 620007.0 33 773708.0 34 985970.0 35 1293054.0 36 1846081.0 37 3092985.0 38 9103340.0 39 3089550.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.57576360814836 19.06559487176015 12.413110691538437 24.945530828553057 2 18.543711669455597 22.26689792891851 33.78812017676685 25.401270224859047 3 19.970729662241457 23.44919043410648 30.286195829453877 26.293884074198182 4 14.750596305425498 16.32676209605127 35.00132375539955 33.92131784312369 5 14.527637383696593 36.161489190092944 34.234161119365105 15.076712306845359 6 33.51964095146139 35.855073447541784 15.289858468521835 15.335427132474985 7 29.062454085119715 31.292311482679025 20.899525866074995 18.745708566126265 8 27.723073887533285 33.3591284651199 19.611970406614926 19.305827240731887 9 26.226368592063253 14.714158959854467 19.741057440960553 39.31841500712173 10 16.537090166691186 27.974332422370384 31.912388231475973 23.576189179462457 11 35.78049295402502 22.432593768352213 21.288110284871635 20.49880299275113 12 22.615963127235183 25.46959904060047 29.223415004044245 22.6910228281201 13 30.46306731228062 20.084613952742416 24.604203290492784 24.84811544448418 14 21.976287236720616 20.615755968967413 26.2120407313953 31.195916062916673 15 24.560577834399474 28.315888573120052 23.13699782475026 23.98653576773021 16 24.01894161645174 27.558828859397654 24.464877045501048 23.957352478649554 17 23.307252728778213 26.985147297353972 25.768892618597448 23.93870735527036 18 24.279656803113564 25.40418064025094 27.027088933061943 23.289073623573557 19 25.213842990739337 25.42671217934982 26.682934511169353 22.67651031874148 20 24.904160724568573 25.437298705427892 26.79584719774039 22.862693372263145 21 24.373915573509663 25.996744731158948 26.371440929074936 23.257898766256453 22 24.24201924092322 25.486120703807025 26.512785120690353 23.759074934579402 23 23.8423295210995 25.740579816295632 26.592553363697203 23.82453729890766 24 23.688671019041944 25.825052205026545 26.73704977258753 23.74922700334399 25 24.11486662164169 25.569929236459117 26.939033480064577 23.376170661834614 26 23.490758375995245 26.01320924119316 26.930025260822898 23.5660071219887 27 23.6384685517307 25.892514930386994 26.88002942421168 23.58898709367062 28 23.634335937730125 25.85287700716446 27.01570665896887 23.497080396136553 29 23.302381519934983 26.138159265140338 26.88312448831424 23.67633472661044 30 23.767792991561464 26.02451238012452 26.644136299940552 23.563558328373464 31 23.398614272976037 26.004878067223913 26.80777462516971 23.78873303463034 32 23.203058099189242 26.36337353897807 26.615076110000334 23.818492251832353 33 23.368397830395235 26.223000951292576 26.80583581370774 23.602765404604455 34 23.568548239959263 26.058887815093136 26.694057397787923 23.678506547159675 35 23.307257125176086 26.374470047209396 26.92540025026055 23.39287257735396 36 23.185503282482543 26.006874031858235 26.99603717488528 23.811585510773945 37 23.27587563715895 25.697314864827913 27.051335067331273 23.97547443068186 38 23.06694562104264 25.685580878905 27.23922392322764 24.00824957682472 39 22.89089186822026 25.274135191169005 27.54716081944284 24.28781212116789 40 23.105330570871384 24.94057608815024 27.693824652484533 24.260268688493845 41 22.639123351229898 24.61523385275602 28.202760463053245 24.54288233296084 42 22.571357274416208 24.12671931030717 28.354295504938165 24.947627910338454 43 22.18366972078565 23.372851381440533 29.002997200285908 25.440481697487904 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1547.0 1 1816.0 2 2085.0 3 7034.0 4 11983.0 5 11983.0 6 18875.5 7 25768.0 8 26400.5 9 27033.0 10 35281.5 11 43530.0 12 43530.0 13 71940.5 14 100351.0 15 159494.5 16 218638.0 17 214458.0 18 210278.0 19 210278.0 20 204307.0 21 198336.0 22 182203.0 23 166070.0 24 212643.0 25 259216.0 26 259216.0 27 357537.0 28 455858.0 29 532207.5 30 608557.0 31 698196.0 32 787835.0 33 787835.0 34 892579.0 35 997323.0 36 1042405.0 37 1087487.0 38 1147435.0 39 1207383.0 40 1207383.0 41 1201793.5 42 1196204.0 43 1224593.5 44 1252983.0 45 1323373.0 46 1393763.0 47 1393763.0 48 1475905.5 49 1558048.0 50 1623032.5 51 1688017.0 52 1701550.5 53 1715084.0 54 1715084.0 55 1666217.0 56 1617350.0 57 1548990.0 58 1480630.0 59 1372257.0 60 1263884.0 61 1263884.0 62 1117460.5 63 971037.0 64 830075.5 65 689114.0 66 595923.5 67 502733.0 68 502733.0 69 421398.5 70 340064.0 71 299113.0 72 258162.0 73 209361.5 74 160561.0 75 160561.0 76 130766.5 77 100972.0 78 83464.0 79 65956.0 80 52843.0 81 39730.0 82 39730.0 83 31203.5 84 22677.0 85 18035.5 86 13394.0 87 9098.5 88 4803.0 89 4803.0 90 2908.5 91 1014.0 92 657.5 93 301.0 94 205.5 95 110.0 96 110.0 97 61.5 98 13.0 99 12.5 100 12.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 2.2745894E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.501935134470195 #Duplication Level Percentage of deduplicated Percentage of total 1 78.25705270394396 32.47819125133897 2 10.688682250629759 8.872019948771982 3 3.9273593301967566 4.889790365147462 4 1.9189796791779838 3.1856548067844446 5 1.1116504266973264 2.306782195049927 6 0.7381654394278305 1.8381176511384907 7 0.5115691235699678 1.4861776008238998 8 0.3765473153101833 1.25019538040497 9 0.2964506843255195 1.107294936430231 >10 1.839978941378661 14.588871275912869 >50 0.18381423920599516 5.304568408559934 >100 0.1283070018417137 10.457699184199456 >500 0.013497570960281946 3.8594428187646925 >1k 0.007577315381066737 5.863821314846414 >5k 2.3130042760546502E-4 0.6271690746973696 >10k+ 1.3667752540317258E-4 1.8842037871287638 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 99623 0.43798234529713365 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 97449 0.4284245763213352 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 74612 0.328024038096722 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 33546 0.1474815630460601 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.3963978729523664E-6 0.0 0.0 0.0 7.473876384019024E-5 2 8.353155958609496E-5 0.0 0.0 2.1981989364761834E-5 8.353155958609496E-5 3 1.055135489508568E-4 0.0 0.0 2.63783872377142E-5 8.353155958609496E-5 4 1.0990994682380917E-4 0.0 0.0 3.517118298361893E-5 8.792795745904734E-5 5 2.901622596148562E-4 0.0 0.0 6.59459680942855E-5 8.792795745904734E-5 6 3.9127941069276063E-4 0.0 0.0 7.91351617131426E-5 1.4068473193447573E-4 7 4.264505936763796E-4 0.0 0.0 7.91351617131426E-5 1.4068473193447573E-4 8 5.671353256108553E-4 0.0 0.0 9.672075320495207E-5 1.4947752768038048E-4 9 6.023065085944742E-4 0.0 0.0 1.187027425697139E-4 1.6266672129923757E-4 10 9.628111341765683E-4 0.0 0.0 2.505946787582849E-4 1.6266672129923757E-4 11 0.0010727210810003774 0.0 0.0 3.297298404714275E-4 1.6706311917218992E-4 12 0.0011166850597299012 0.0 0.0 3.3852263621733224E-4 2.63783872377142E-4 13 0.001200216619315996 0.0 0.0 3.5171182983618934E-4 2.9895505536076095E-4 14 0.0013233157597586623 0.0 0.0 3.868830128198083E-4 3.297298404714275E-4 15 0.001450811298074281 4.3963978729523664E-6 0.0 4.1765779793047483E-4 3.736938192009512E-4 16 0.0014903788789308522 4.3963978729523664E-6 0.0 8.001444128773308E-4 4.0446860431161773E-4 17 0.0015079644704226619 4.3963978729523664E-6 0.0 0.0013760725342340909 4.132614000575225E-4 18 0.0015299464597874235 4.3963978729523664E-6 0.0 0.0021981989364761832 4.923965617706651E-4 19 0.0015739104385169473 4.3963978729523664E-6 4.3963978729523664E-6 0.0031214424897961805 4.967929596436174E-4 20 0.0019476042577178984 4.3963978729523664E-6 8.792795745904733E-6 0.005403172985858459 5.27567744754284E-4 21 0.002949982972751038 8.792795745904733E-6 8.792795745904733E-6 0.010714021616384918 5.363605405001887E-4 22 0.002993946951480562 8.792795745904733E-6 8.792795745904733E-6 0.016002888257546616 5.627389277379029E-4 23 0.0030159289408453237 8.792795745904733E-6 8.792795745904733E-6 0.019181483919691177 6.023065085944742E-4 24 0.003068685715320752 8.792795745904733E-6 8.792795745904733E-6 0.024065881956541257 6.154957022133313E-4 25 0.003103856898304371 1.31891936188571E-5 8.792795745904733E-6 0.02684440541224715 6.154957022133313E-4 26 0.0033896227600462747 1.31891936188571E-5 1.31891936188571E-5 0.03304772281098294 6.330812937051408E-4 27 0.0034951363089971315 1.7585591491809466E-5 1.31891936188571E-5 0.07258892528031653 6.506668851969503E-4 28 0.003534703889853703 1.7585591491809466E-5 1.31891936188571E-5 0.16453079399736936 6.506668851969503E-4 29 0.0035391002877266553 1.7585591491809466E-5 1.31891936188571E-5 0.309748212138859 6.550632830699026E-4 30 0.0035434966855996076 2.1981989364761834E-5 1.31891936188571E-5 0.4564252343741688 6.550632830699026E-4 31 0.0035830642664561787 2.1981989364761834E-5 1.31891936188571E-5 0.5486924365338202 6.59459680942855E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 48035 0.0 17.739357 1 TATACCG 1225 0.0 13.591836 5 GTATCAA 77710 0.0 13.436365 1 TAGCGCA 4860 0.0 12.447531 4 TTAGGCA 8620 0.0 12.297564 4 TGAACCG 6575 0.0 12.070722 14 TAGTCCC 7670 0.0 11.939373 5 CTACTCG 7250 0.0 11.916552 14 TATACTG 3090 0.0 11.914239 5 TACCTAT 3030 0.0 11.905939 32 ATACCGT 1245 0.0 11.7389555 6 CGTATAC 615 0.0 11.731707 3 AACGCAG 86965 0.0 11.7064905 6 ACCTATC 3115 0.0 11.699839 33 TATACAC 10680 0.0 11.675093 37 TACTCGG 7485 0.0 11.59185 15 CGGAAAC 6835 0.0 11.449158 29 GCCTAAG 8275 0.0 11.446525 1 ATAGCGC 5320 0.0 11.440788 3 CGTATCG 635 0.0 11.362204 10 >>END_MODULE