##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041735_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 10471138 Sequences flagged as poor quality 0 Sequence length 43 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.98537074002845 34.0 33.0 34.0 31.0 34.0 2 33.14568311486297 34.0 33.0 34.0 31.0 34.0 3 33.19935836964425 34.0 33.0 34.0 31.0 34.0 4 36.52127686599107 37.0 37.0 37.0 35.0 37.0 5 36.52195024074747 37.0 37.0 37.0 35.0 37.0 6 36.59100749125835 37.0 37.0 37.0 35.0 37.0 7 36.55058485524687 37.0 37.0 37.0 35.0 37.0 8 36.541529488007896 37.0 37.0 37.0 35.0 37.0 9 38.32161719194227 39.0 39.0 39.0 37.0 39.0 10 38.32913967899191 39.0 39.0 39.0 37.0 39.0 11 38.38125540891544 39.0 39.0 39.0 37.0 39.0 12 38.30479733912398 39.0 39.0 39.0 37.0 39.0 13 38.308928217735264 39.0 39.0 39.0 37.0 39.0 14 39.17312397181663 40.0 40.0 40.0 38.0 40.0 15 39.18499985388408 40.0 40.0 40.0 38.0 40.0 16 39.18562643334469 40.0 40.0 40.0 38.0 40.0 17 39.22879576221801 40.0 40.0 40.0 38.0 40.0 18 39.21702712732847 40.0 40.0 40.0 38.0 40.0 19 39.24556977474655 40.0 40.0 40.0 38.0 40.0 20 39.2051690083733 40.0 40.0 40.0 38.0 40.0 21 39.15716744445542 40.0 40.0 40.0 37.0 40.0 22 39.10216807380439 40.0 40.0 40.0 37.0 40.0 23 39.04519919420411 40.0 40.0 40.0 37.0 40.0 24 39.007842796074314 40.0 39.0 40.0 37.0 40.0 25 38.972048501318575 40.0 39.0 40.0 37.0 40.0 26 38.8764263253908 40.0 39.0 40.0 36.0 40.0 27 38.80453194294641 40.0 39.0 40.0 36.0 40.0 28 38.7454196477976 40.0 39.0 40.0 36.0 40.0 29 38.6613218162152 40.0 39.0 40.0 35.0 40.0 30 38.56548084840444 40.0 38.0 40.0 35.0 40.0 31 38.43935453816004 40.0 38.0 40.0 35.0 40.0 32 38.459543174772406 40.0 38.0 40.0 35.0 40.0 33 38.501500600985295 40.0 39.0 40.0 35.0 40.0 34 38.48134949611016 40.0 39.0 40.0 35.0 40.0 35 38.489574963103344 40.0 39.0 40.0 35.0 40.0 36 38.47071321187821 40.0 39.0 40.0 35.0 40.0 37 38.418416699311955 40.0 39.0 40.0 35.0 40.0 38 38.37719797026837 40.0 39.0 40.0 35.0 40.0 39 38.330124672218055 40.0 39.0 40.0 35.0 40.0 40 38.27616119661492 40.0 38.0 40.0 35.0 40.0 41 38.22081095674606 40.0 38.0 40.0 35.0 40.0 42 38.12378979247528 40.0 38.0 40.0 35.0 40.0 43 37.84253211064547 40.0 38.0 40.0 35.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 5.0 11 3.0 12 3.0 13 19.0 14 22.0 15 29.0 16 47.0 17 89.0 18 121.0 19 179.0 20 322.0 21 613.0 22 1203.0 23 2414.0 24 4560.0 25 7655.0 26 12512.0 27 19432.0 28 30025.0 29 43012.0 30 57822.0 31 75459.0 32 98261.0 33 132962.0 34 194386.0 35 300025.0 36 528841.0 37 1156744.0 38 5060980.0 39 2743393.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.965928058631256 19.07496587285928 14.69359872823756 22.2655073402719 2 15.268168560093468 22.78716028764018 39.29911915973221 22.645551992534145 3 16.905249458081826 27.1620238411527 32.427965327168835 23.50476137359664 4 11.797609772691372 17.489951903985983 38.63843643355669 32.074001889765945 5 12.966747262809447 38.47136767751509 34.585047012082164 13.976838047593299 6 29.839679316612962 39.52505448786942 16.299670580217736 14.335595615299884 7 25.840801639707166 33.87718698769895 22.689253068768647 17.59275830382524 8 26.4496179880353 35.26378890240965 20.031815071103065 18.25477803845198 9 26.486414370625237 15.092858101956065 20.317228175199293 38.10349935221941 10 14.709232177056592 30.000970286133178 33.032789750264016 22.257007786546218 11 32.99687197322774 24.193750478696778 23.96252441711684 18.846853130958642 12 22.384682543578357 27.16427765539906 30.788153111915822 19.662886689106763 13 28.72294300772275 23.008263285232225 27.0165382215381 21.252255485506925 14 22.084180344103956 21.7848146018131 29.7499660495354 26.381039004547546 15 22.976031831497206 30.097082093655914 25.918500930844385 21.008385144002496 16 21.60610432218542 28.62972486849089 27.146075240341595 22.618095568982092 17 21.46630098848855 28.093183377012128 28.446965363268063 21.993550271231264 18 22.34033206323897 26.204592089226598 30.35734033874828 21.09773550878615 19 23.463180410763375 26.69112946462935 30.17447578286142 19.671214341745856 20 22.5634310234475 26.660645671941293 30.39867300001203 20.377250304599176 21 21.897476663949995 27.05998144614272 30.422385799900642 20.620156090006645 22 21.541966116767824 26.645231874510678 30.389161139887566 21.42364086883393 23 21.327395360466074 26.31965121651534 30.528219568875897 21.824733854142693 24 20.94928937045811 26.735556345451663 30.604390850354562 21.710763433735664 25 21.54371377781479 26.60627717827804 30.6480537263476 21.201955317559563 26 21.484665754572234 26.54480343970254 30.74680135053134 21.223729455193887 27 21.56077973568871 27.06975115789707 30.594926740531925 20.774542365882294 28 21.89602505477437 26.48389315468863 30.652618655202517 20.96746313533448 29 21.26416441078324 26.926146900174558 30.929876007746245 20.87981268129596 30 21.617134641908073 26.944521216318606 30.64698411958662 20.7913600221867 31 21.50751904902791 26.390283462981767 30.915999770034546 21.186197717955775 32 21.234196321354947 26.951530960627203 30.36889591179106 21.445376806226793 33 21.389470752844627 26.80047765581926 30.38625792153632 21.42379366979979 34 21.567693979393642 27.096959279879606 30.39926510375472 20.936081636972027 35 21.52848143153113 27.12636391574631 30.320190603924807 21.024964048797752 36 21.61617963587148 27.12752902311096 30.099546009230327 21.156745331787242 37 21.35888190949255 26.754455914915837 30.321279310806524 21.565382864785086 38 21.531470600425664 27.080619126593497 30.168831697185155 21.219078575795677 39 21.51080426979379 27.080542726110572 29.990264668462967 21.418388335632667 40 21.645737072704037 26.88909266595474 30.54715733858154 20.918012922759686 41 21.786113410022864 26.83507752452503 30.22074582533436 21.15806324011774 42 21.64495396775403 26.936470515430127 30.24607258542481 21.17250293139103 43 21.586507598314526 26.597701224069436 30.438601802401994 21.37718937521404 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 19651.0 1 16173.5 2 12696.0 3 23580.0 4 34464.0 5 34464.0 6 33654.5 7 32845.0 8 24140.5 9 15436.0 10 23243.0 11 31050.0 12 31050.0 13 49090.5 14 67131.0 15 131376.0 16 195621.0 17 197889.0 18 200157.0 19 200157.0 20 184393.5 21 168630.0 22 152131.5 23 135633.0 24 160785.0 25 185937.0 26 185937.0 27 214083.5 28 242230.0 29 278228.0 30 314226.0 31 355114.5 32 396003.0 33 396003.0 34 439211.5 35 482420.0 36 531731.0 37 581042.0 38 623445.0 39 665848.0 40 665848.0 41 693837.5 42 721827.0 43 747806.5 44 773786.0 45 786723.0 46 799660.0 47 799660.0 48 816870.0 49 834080.0 50 815788.0 51 797496.0 52 780116.0 53 762736.0 54 762736.0 55 677403.0 56 592070.0 57 515333.5 58 438597.0 59 388123.0 60 337649.0 61 337649.0 62 287072.0 63 236495.0 64 193022.0 65 149549.0 66 123803.5 67 98058.0 68 98058.0 69 77852.0 70 57646.0 71 47741.0 72 37836.0 73 29998.5 74 22161.0 75 22161.0 76 17116.5 77 12072.0 78 9312.5 79 6553.0 80 5962.5 81 5372.0 82 5372.0 83 4412.0 84 3452.0 85 2700.0 86 1948.0 87 1285.5 88 623.0 89 623.0 90 431.5 91 240.0 92 168.5 93 97.0 94 91.5 95 86.0 96 86.0 97 48.5 98 11.0 99 14.5 100 18.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 1.0471138E7 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.459222400669002 #Duplication Level Percentage of deduplicated Percentage of total 1 52.02469509036669 13.76532977723005 2 18.438228488216637 9.7572237648815 3 9.631911409728211 7.6455865840062005 4 5.454396424628856 5.772763522426748 5 3.3311678010578354 4.407005485106839 6 2.2575651397708767 3.5840050870317013 7 1.593128500928176 2.950705892323211 8 1.1474813355733435 2.4289171086841437 9 0.8556059792171069 2.037480200230285 >10 4.696721838274414 22.52779783441318 >50 0.35233637598688156 6.43260493142577 >100 0.20123887707252375 9.767277228246229 >500 0.011553977343657783 2.048031414086379 >1k 0.0033914878662889736 1.5661717533475987 >5k 1.4431849214434524E-4 0.30858698241675797 >10k+ 4.329554764330357E-4 5.000512434143444 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 135886 1.2977195028849777 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 132397 1.2643993422682425 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 80188 0.765800240623321 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35439 0.338444589308249 No Hit GTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTGGT 28164 0.26896790014609684 No Hit GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 26300 0.2511665876240004 No Hit GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20625 0.19696999504733867 No Hit GAGTACGGAAGCAGTGGTATCAACGCAGAGTACGGAAGCAGTG 14690 0.14029038677553482 No Hit GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13380 0.12777980769616445 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13141 0.1254973432687068 No Hit ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12299 0.11745619244059241 No Hit CTTCCGTACTCTGCGTTGATACCACTGCTTCCGTACTCTGCGT 11303 0.10794433231612456 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 2.8650181097794718E-5 0.0 3 0.0 0.0 0.0 4.775030182965787E-5 0.0 4 0.0 0.0 0.0 9.550060365931573E-5 0.0 5 7.640048292745259E-5 0.0 0.0 1.432509054889736E-4 0.0 6 4.0110253536912606E-4 0.0 0.0 1.432509054889736E-4 0.0 7 4.1065259573505765E-4 0.0 0.0 1.6235102622083673E-4 0.0 8 4.584028975647155E-4 0.0 0.0 1.7190108658676832E-4 0.0 9 4.6795295793064707E-4 0.0 0.0 2.3875150914828933E-4 0.0 10 6.685042256152101E-4 0.0 0.0 3.6290229390539976E-4 0.0 11 7.735548896404574E-4 0.0 0.0 4.8705307866251025E-4 0.0 12 7.83104950006389E-4 0.0 0.0 5.539035012240313E-4 0.0 13 8.213051914701153E-4 0.0 0.0 6.016538030536891E-4 0.0 14 9.741061573250205E-4 0.0 0.0 6.398540445174154E-4 0.0 15 0.0010123063987887467 0.0 0.0 6.876043463470733E-4 0.0 16 0.0011746574250095835 0.0 0.0 7.353546481767312E-4 0.0 17 0.001184207485375515 0.0 0.0 8.213051914701153E-4 0.0 18 0.001184207485375515 0.0 0.0 9.16805795129431E-4 0.0 19 0.0011937575457414465 0.0 0.0 0.0010123063987887467 0.0 20 0.0013561085719622833 0.0 0.0 0.0012224077268392414 0.0 21 0.0017572111073314094 0.0 0.0 0.0019195621335522462 0.0 22 0.001766761167697341 0.0 0.0 0.002769517506120156 0.0 23 0.0017954113487951358 0.0 0.0 0.003714973482347382 0.0 24 0.0017954113487951358 0.0 0.0 0.005815986762852328 0.0 25 0.0018240615298929304 0.0 0.0 0.007238945757376132 0.0 26 0.0019864125561137673 0.0 0.0 0.009464109822638189 0.0 27 0.0020055126768456304 0.0 0.0 0.012548779320834086 0.0 28 0.0020628130390412196 0.0 0.0 0.024572305321541938 0.0 29 0.0020628130390412196 0.0 0.0 0.05458814505166487 0.0 30 0.0020628130390412196 0.0 0.0 0.09084017420074113 0.0 31 0.002101013280504946 0.0 0.0 0.12268007546075699 9.550060365931573E-6 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 40065 0.0 14.618995 1 GTATCAA 66590 0.0 14.354934 1 TATACCG 485 0.0 12.206185 5 CGTTTCG 125 7.2272937E-4 11.840001 29 AACGCAG 91520 0.0 10.988418 5 CGATGCG 565 0.0 10.80531 33 TATCAAC 92810 0.0 10.738013 1 ATACGTA 865 0.0 10.693641 25 GTATTAT 2000 0.0 10.637501 1 GTATAAA 3100 0.0 10.503225 1 ATCAACG 95270 0.0 10.47822 2 GTATAGA 2140 0.0 10.460281 1 TCAACGC 95915 0.0 10.457907 3 CAACGCA 96630 0.0 10.407327 4 ATAGCGT 625 0.0 10.360001 6 GTATAAG 2060 0.0 10.32767 1 ACGCAGA 97585 0.0 10.324434 6 TATACTG 2835 0.0 10.310406 5 CGCAGAG 98220 0.0 10.289707 7 AGAGTAC 99145 0.0 10.221695 10 >>END_MODULE