##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR1041734_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 7394654 Sequences flagged as poor quality 0 Sequence length 43 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.89277442866157 34.0 31.0 34.0 31.0 34.0 2 33.09722050551655 34.0 33.0 34.0 31.0 34.0 3 33.14996874769259 34.0 33.0 34.0 31.0 34.0 4 36.49867133742836 37.0 37.0 37.0 35.0 37.0 5 36.47071844064644 37.0 37.0 37.0 35.0 37.0 6 36.529593000565 37.0 37.0 37.0 35.0 37.0 7 36.490391572073555 37.0 37.0 37.0 35.0 37.0 8 36.47595533205475 37.0 37.0 37.0 35.0 37.0 9 38.24508421895061 39.0 39.0 39.0 37.0 39.0 10 38.22654055213401 39.0 39.0 39.0 37.0 39.0 11 38.29006103598627 39.0 39.0 39.0 37.0 39.0 12 38.19562605633746 39.0 39.0 39.0 37.0 39.0 13 38.213897364230974 39.0 39.0 39.0 37.0 39.0 14 39.123932505834624 40.0 40.0 40.0 37.0 40.0 15 39.147121690886415 40.0 40.0 40.0 38.0 40.0 16 39.13497670073542 40.0 40.0 40.0 37.0 40.0 17 39.12935980506999 40.0 40.0 40.0 37.0 40.0 18 39.09156412186425 40.0 40.0 40.0 37.0 40.0 19 39.095164696008766 40.0 40.0 40.0 37.0 40.0 20 39.047128641853966 40.0 40.0 40.0 37.0 40.0 21 39.000008113969905 40.0 39.0 40.0 37.0 40.0 22 38.94568968338478 40.0 39.0 40.0 37.0 40.0 23 38.88870784217896 40.0 39.0 40.0 37.0 40.0 24 38.839841323204574 40.0 39.0 40.0 36.0 40.0 25 38.81131422781918 40.0 39.0 40.0 36.0 40.0 26 38.69840022264734 40.0 39.0 40.0 36.0 40.0 27 38.637339894469704 40.0 39.0 40.0 36.0 40.0 28 38.566580667601215 40.0 39.0 40.0 36.0 40.0 29 38.50467932644313 40.0 38.0 40.0 35.0 40.0 30 38.42231374179238 40.0 38.0 40.0 35.0 40.0 31 38.33248655041872 40.0 38.0 40.0 35.0 40.0 32 38.40296138264211 40.0 38.0 40.0 35.0 40.0 33 38.489921232284836 40.0 39.0 40.0 35.0 40.0 34 38.4902173921863 40.0 39.0 40.0 35.0 40.0 35 38.520441524376935 40.0 39.0 40.0 35.0 40.0 36 38.50274590264805 40.0 39.0 40.0 35.0 40.0 37 38.46359139994921 40.0 39.0 40.0 35.0 40.0 38 38.423620361412446 40.0 39.0 40.0 35.0 40.0 39 38.36963284556654 40.0 38.0 40.0 35.0 40.0 40 38.33323817449742 40.0 38.0 40.0 35.0 40.0 41 38.28200318770831 40.0 38.0 40.0 35.0 40.0 42 38.197294153316705 40.0 38.0 40.0 35.0 40.0 43 37.88140175321252 40.0 38.0 40.0 34.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 0.0 11 2.0 12 1.0 13 1.0 14 6.0 15 5.0 16 8.0 17 24.0 18 47.0 19 73.0 20 211.0 21 459.0 22 1050.0 23 2087.0 24 3812.0 25 6480.0 26 10450.0 27 15845.0 28 23196.0 29 32742.0 30 45184.0 31 60227.0 32 79092.0 33 105574.0 34 150058.0 35 220233.0 36 366452.0 37 797013.0 38 3831390.0 39 1642931.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 43.86857045644056 18.187301258449683 13.033550995083745 24.910577290026012 2 17.100881258271176 20.22888427234053 37.13485445025555 25.53538001913274 3 18.416615571195084 23.51984284863092 30.18851186275923 27.87502971741477 4 13.61664791888843 16.534255693369833 35.83449611029806 34.01460027744368 5 14.48004193299646 36.75280817736705 34.09273780761074 14.674412082025745 6 33.324777602846595 36.44601897533001 15.851086474093313 14.378116947730076 7 28.98141008355496 31.482825295138895 20.722659910795016 18.813104710511134 8 27.394790885415325 34.39737680762345 18.592120740199608 19.61571156676161 9 27.064917439003906 14.526548503824518 18.761499861927277 39.647034195244295 10 15.795654536371817 28.116230996068243 31.99710223088193 24.09101223667801 11 35.8028921975254 22.18443215869194 22.33923318116034 19.67344246262232 12 23.2518384227308 24.42601100741157 29.440228035010158 22.881922534847472 13 29.53654085776021 21.207875311001708 25.180123370207717 24.07546046103036 14 22.79837569141166 20.141321013802674 26.6299004659312 30.43040282885447 15 24.693704397798736 28.04051413358894 23.1205949595478 24.14518650906452 16 24.299324890657495 27.322495413578512 24.217603690449884 24.16057600531411 17 23.617886651626975 26.744036975901782 25.919860482992174 23.718215889479076 18 24.314660293774395 26.11205338343079 26.47776353024766 23.095522792547158 19 25.504546933500876 25.58614642415994 26.404061636960975 22.50524500537821 20 24.68066795282105 25.809280596495793 26.124684129913312 23.38536732076984 21 24.654797912113263 25.510524224662845 26.52807014364702 23.30660771957687 22 24.212573029109947 25.42970908442775 26.440263466012066 23.91745442045023 23 23.826943086180908 25.269701597938187 26.976867342271866 23.926487973609042 24 23.61932011964319 25.65035497265998 26.850803296543692 23.879521611153137 25 23.856802495424397 25.641605408447777 26.805297448670352 23.696294647457474 26 23.775919738773442 25.824264394250225 26.874293239413234 23.525522627563102 27 24.064709450908726 26.04248961479469 26.28045882877008 23.61234210552651 28 24.028832180653755 25.65602122830899 26.522904249475367 23.792242341561888 29 24.066819083083534 25.612286930531162 26.452231571619173 23.868662414766124 30 23.804332156717543 26.20095544700266 26.433380114877586 23.561332281402215 31 23.911044384226766 25.50364087352836 26.797102339068196 23.788212403176672 32 24.075717403410625 25.603997157946807 26.49504628614131 23.825239152501254 33 24.326885341761763 25.615262052828975 26.516250794154807 23.541601811254456 34 24.25757851550593 25.45378052847368 26.205336990750343 24.083303965270044 35 24.14041279010485 26.045572923357874 26.119666991856548 23.694347294680725 36 24.128363544798713 25.72304261970878 26.545190620142606 23.6034032153499 37 24.5569028652321 25.273393454244108 26.293576413446797 23.876127267077 38 24.092188762313963 25.639698625520545 26.404697231270053 23.863415380895443 39 23.978430904272194 25.562480678609166 26.71070208288312 23.748386334235516 40 24.166472156777044 25.514527116481716 26.810436296275657 23.508564430465576 41 24.51676576077799 25.43621378363342 26.4810632113416 23.565957244246995 42 24.4606576588979 25.50955054827447 26.376176627060577 23.653615165767054 43 24.19936078145103 25.125178270680415 26.440669164507224 24.23479178336133 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 2376.0 1 2090.0 2 1804.0 3 3357.5 4 4911.0 5 4911.0 6 5458.5 7 6006.0 8 4682.5 9 3359.0 10 4884.0 11 6409.0 12 6409.0 13 10916.0 14 15423.0 15 31209.5 16 46996.0 17 50504.5 18 54013.0 19 54013.0 20 51778.0 21 49543.0 22 48856.0 23 48169.0 24 59225.0 25 70281.0 26 70281.0 27 84399.0 28 98517.0 29 116139.5 30 133762.0 31 158004.5 32 182247.0 33 182247.0 34 209724.5 35 237202.0 36 269088.5 37 300975.0 38 336780.5 39 372586.0 40 372586.0 41 409491.5 42 446397.0 43 484776.0 44 523155.0 45 565102.0 46 607049.0 47 607049.0 48 637835.5 49 668622.0 50 679089.5 51 689557.0 52 674755.0 53 659953.0 54 659953.0 55 629777.0 56 599601.0 57 538039.0 58 476477.0 59 414356.0 60 352235.0 61 352235.0 62 305311.5 63 258388.0 64 222200.0 65 186012.0 66 150266.5 67 114521.0 68 114521.0 69 91389.5 70 68258.0 71 56650.5 72 45043.0 73 36261.0 74 27479.0 75 27479.0 76 21875.0 77 16271.0 78 12909.0 79 9547.0 80 7571.0 81 5595.0 82 5595.0 83 4378.5 84 3162.0 85 2443.0 86 1724.0 87 1205.0 88 686.0 89 686.0 90 455.5 91 225.0 92 151.5 93 78.0 94 53.0 95 28.0 96 28.0 97 17.5 98 7.0 99 6.0 100 5.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 43 7394654.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.41363772013527 #Duplication Level Percentage of deduplicated Percentage of total 1 70.38696035259734 31.9652791767438 2 15.40501006218076 13.99195092077831 3 5.533244078809574 7.538542260364246 4 2.6780390007823063 4.864779719276828 5 1.5292309867085474 3.4723971010393484 6 0.934479372220173 2.5462864600167823 7 0.6464347217126358 2.0549866583101877 8 0.4773226286091779 1.7341565545023905 9 0.3589565207727512 1.467136925248854 >10 1.888556988370091 15.1801998337636 >50 0.09974052803657545 3.086029930117831 >100 0.050636007180472085 4.395653661872733 >500 0.006293947878163311 1.9823243434229243 >1k 0.004885018089825921 4.137449738256872 >5k 1.198777437683561E-4 0.39164743362106735 >10k+ 8.990830782626706E-5 1.1911792826643535 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT 35463 0.4795761911240201 No Hit TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT 30627 0.4141775937048576 No Hit GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT 21431 0.2898174816563425 No Hit GTCATAGAGGGTGCGAACCCCGTAGTCGAAATGCAGCAATGGC 9749 0.13183848764255907 No Hit ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7429 0.10046447068382104 No Hit >>END_MODULE >>Adapter Content pass #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.0 0.0 2 0.0 0.0 0.0 0.0 0.0 3 0.0 0.0 0.0 1.352328317186984E-5 0.0 4 0.0 0.0 0.0 2.704656634373968E-5 0.0 5 0.0 1.352328317186984E-5 0.0 5.409313268747936E-5 0.0 6 1.352328317186984E-5 1.352328317186984E-5 0.0 5.409313268747936E-5 0.0 7 1.352328317186984E-5 1.352328317186984E-5 0.0 6.76164158593492E-5 0.0 8 1.352328317186984E-5 1.352328317186984E-5 0.0 6.76164158593492E-5 0.0 9 1.352328317186984E-5 1.352328317186984E-5 0.0 9.466298220308888E-5 0.0 10 2.704656634373968E-5 1.352328317186984E-5 0.0 1.6227939806243808E-4 1.352328317186984E-5 11 4.056984951560952E-5 1.352328317186984E-5 0.0 1.7580268123430792E-4 2.704656634373968E-5 12 4.056984951560952E-5 1.352328317186984E-5 0.0 1.7580268123430792E-4 2.704656634373968E-5 13 5.409313268747936E-5 1.352328317186984E-5 0.0 2.028492475780476E-4 2.704656634373968E-5 14 5.409313268747936E-5 1.352328317186984E-5 0.0 2.028492475780476E-4 2.704656634373968E-5 15 6.76164158593492E-5 2.704656634373968E-5 0.0 2.1637253074991745E-4 5.409313268747936E-5 16 6.76164158593492E-5 2.704656634373968E-5 0.0 2.4341909709365712E-4 5.409313268747936E-5 17 9.466298220308888E-5 2.704656634373968E-5 0.0 2.56942380265527E-4 5.409313268747936E-5 18 9.466298220308888E-5 2.704656634373968E-5 0.0 2.975122297811365E-4 6.76164158593492E-5 19 9.466298220308888E-5 2.704656634373968E-5 0.0 3.38082079296746E-4 6.76164158593492E-5 20 1.0818626537495873E-4 2.704656634373968E-5 0.0 3.5160536246861584E-4 6.76164158593492E-5 21 1.2170954854682856E-4 2.704656634373968E-5 0.0 4.8683819418731425E-4 8.113969903121904E-5 22 1.2170954854682856E-4 2.704656634373968E-5 0.0 7.302572912809713E-4 8.113969903121904E-5 23 1.2170954854682856E-4 2.704656634373968E-5 0.0 9.195832556871492E-4 1.0818626537495873E-4 24 1.352328317186984E-4 2.704656634373968E-5 0.0 0.0013117584676713744 1.0818626537495873E-4 25 1.352328317186984E-4 2.704656634373968E-5 0.0 0.0014199447330463333 1.0818626537495873E-4 26 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.0017309802459993396 1.0818626537495873E-4 27 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.0025694238026552694 1.0818626537495873E-4 28 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.005842058330247771 1.0818626537495873E-4 29 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.012468467084463992 1.0818626537495873E-4 30 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.02113689159763256 1.0818626537495873E-4 31 1.6227939806243808E-4 2.704656634373968E-5 0.0 0.034349139256549394 1.2170954854682856E-4 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTATCA 6580 0.0 27.553192 1 GTATCAA 14815 0.0 20.716505 1 TCGAAAT 2370 0.0 18.109705 26 GTCGAAA 2395 0.0 17.843422 25 TAGTCGA 2560 0.0 17.054688 23 AGTCGAA 2615 0.0 16.908222 24 TGCGAAC 2525 0.0 16.851484 12 CCCGTAG 2570 0.0 16.772373 19 CCGTAGT 2580 0.0 16.635658 20 GTGCGAA 2600 0.0 16.578848 11 TACGCAT 1010 0.0 16.48515 19 GTAGTCG 2680 0.0 16.152985 22 TCGCGAA 175 1.3278623E-10 15.857142 34 CCCCGTA 2730 0.0 15.789378 18 CGTAGTC 2735 0.0 15.760511 21 ACCCCGT 2830 0.0 15.166078 17 CGAAATG 2865 0.0 15.109948 27 ACGCATT 1145 0.0 14.86463 20 CGGGTTA 1130 0.0 14.570797 34 CTACGCA 1175 0.0 14.485106 18 >>END_MODULE