SRR616892_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616892_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57654199
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	803957	1.3944465692776342	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	489366	0.8487950721507727	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	136958	0.23755078099341906	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	106126	0.18407332308961571	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	83430	0.14470758669286168	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	71760	0.1244662162421162	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	65966	0.11441664465757298	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	363550	35.98114	1
GCGTTTT	173545	32.096275	45
ATAGAAT	413645	31.615318	3
TATAGAA	413845	31.489275	2
CGCGATA	188180	31.20179	21
GAATTCG	417195	30.929441	6
TAGAATT	424940	30.766562	4
AATTCGC	418545	30.682348	7
GCGATAA	184450	30.632278	22
TAATACG	175860	30.625385	26
AGAATTC	422975	30.600927	5
CGATAAT	183940	30.361235	23
ATTCGCG	425155	30.242308	8
ATACGAC	178945	30.230352	28
AATACGA	173240	30.173588	27
TCGCGAT	406055	30.157598	20
TACGACT	182375	30.10627	29
CGACTCA	181910	30.000256	31
CGCGATT	195430	29.862377	21
TCGCGGC	427420	29.849854	10