SRR616890_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616890_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51610324
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	855852	1.6582961192028167	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	525703	1.0186004645117128	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	121305	0.23504018304554725	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	91583	0.17745093016660776	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	77935	0.15100660867775215	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	60782	0.1177710103118128	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	57498	0.11140794233339825	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	373365	37.166004	1
ATAGAAT	415480	33.34664	3
GCGTTTT	175125	33.269733	45
TATAGAA	416005	33.262985	2
GAATTCG	418175	32.614574	6
CGCGATA	189860	32.579273	21
TAGAATT	426290	32.513165	4
AATTCGC	419460	32.368244	7
AGAATTC	424110	32.317825	5
TAATACG	177145	32.173794	26
GCGATAA	185480	32.042988	22
ATTCGCG	425200	31.94013	8
TCGCGAT	407600	31.869078	20
CGATAAT	184525	31.86273	23
CGCGATT	195440	31.75386	21
ATACGAC	180135	31.745258	28
AATACGA	174450	31.73685	27
TACGACT	183640	31.591545	29
TCGCGGC	427065	31.542128	10
CGACTCA	182580	31.527243	31