SRR616888_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616888_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50154758
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	756293	1.5079187502011275	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	459716	0.9165949918450409	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	163863	0.3267147655263335	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	84296	0.16807179091562957	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	78818	0.15714959685380198	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	73162	0.14587250126897233	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	71287	0.14213407230476519	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	351665	34.906193	1
GCGTTTT	163995	32.01168	45
ATAGAAT	393765	31.19071	3
TATAGAA	393790	31.108751	2
GAATTCG	399230	30.386442	6
TAGAATT	405155	30.315762	4
AGAATTC	403030	30.155201	5
AATTCGC	401265	30.135347	7
CGCGATA	184380	30.067884	21
CGCGATT	182120	29.845602	21
ATTCGCG	407960	29.686676	8
TCGCGAT	390035	29.617876	20
TAATACG	171835	29.55098	26
GCGATAA	179555	29.539978	22
CGATAAT	178860	29.363255	23
TCGCGGC	409025	29.358116	10
AATACGA	168530	29.274	27
TTCGCGG	414070	29.265005	9
ATACGAC	175825	29.25221	28
GCGATTT	181430	29.250816	22