SRR616887_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616887_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49481268
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	683717	1.3817693596696026	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	416300	0.8413284801028138	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	146996	0.297074036178701	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	69529	0.14051580084811086	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	67147	0.13570185792328524	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	52822	0.10675150846983146	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	49990	0.10102813048364082	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	311210	35.18022	1
GCGTTTT	144160	32.370983	45
ATAGAAT	344645	31.774405	3
TATAGAA	345150	31.651655	2
GAATTCG	349605	30.882912	6
TAGAATT	354820	30.86332	4
AATTCGC	351305	30.613718	7
AGAATTC	353635	30.572325	5
CGCGATA	161275	30.502615	21
ATTCGCG	357560	30.130568	8
TAATACG	151200	30.07073	26
GCGATAA	157415	30.002035	22
CGCGATT	163735	29.996246	21
TCGCGAT	343090	29.947912	20
CGATAAT	156905	29.793308	23
TCGCGGC	358765	29.757378	10
ATACGAC	154085	29.752453	28
TTCGCGG	362910	29.679716	9
AATACGA	148795	29.663832	27
TACGACT	157040	29.605587	29