SRR616882_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616882_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41253396
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	529535	1.2836155355549395	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	326152	0.7906064266806059	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	60902	0.1476290582234733	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	60793	0.14736483755179816	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	46332	0.11231075376194484	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	222975	37.75237	1
ATAGAAT	250750	33.588524	3
TATAGAA	251680	33.34468	2
GAATTCG	254165	32.612812	6
TAGAATT	258795	32.54154	4
CGCGATA	117900	32.29376	21
AATTCGC	255745	32.241566	7
AGAATTC	258905	32.192993	5
TAATACG	110580	31.887009	26
GCGTTTT	113730	31.887007	45
ATTCGCG	259800	31.773794	8
GCGATAA	116110	31.582123	22
ATACGAC	112330	31.525011	28
AATACGA	108830	31.47001	27
CGATAAT	115785	31.348913	23
TACGACT	115020	31.343376	29
TCGCGGC	262540	31.258934	10
CGACTCA	114600	31.244322	31
TCGCGAT	253150	31.209959	20
TTCGCGG	265265	31.129442	9