SRR616878_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616878_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52691383
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	929989	1.7649736010914727	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	628050	1.1919406252821263	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	143495	0.2723310564841314	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	123998	0.2353288012956502	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	114745	0.21776805516757836	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	67423	0.12795830392229407	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	64399	0.12221922510555475	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	406335	37.725056	1
ATAGAAT	455860	33.61688	3
TATAGAA	457020	33.45359	2
GCGTTTT	193080	33.215935	45
CGCGATA	208200	32.911514	21
GAATTCG	459580	32.8557	6
TAGAATT	467335	32.786987	4
AGAATTC	464100	32.68115	5
AATTCGC	462120	32.56362	7
TAATACG	192940	32.45187	26
GCGATAA	203310	32.33061	22
CGATAAT	202480	32.1326	23
ATTCGCG	468340	32.114628	8
AATACGA	189195	32.07021	27
ATACGAC	197130	31.967422	28
TCGCGAT	448205	31.916069	20
TCGCGGC	468750	31.83839	10
TACGACT	200430	31.812653	29
CGACTCA	198250	31.72441	31
ATAATAC	197725	31.658983	25