SRR616875_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616875_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	50263861
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	891702	1.7740419901288522	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	568586	1.1312023960912991	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	108731	0.2163204295030181	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	99596	0.1981463381812233	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	94697	0.1883997729501918	No Hit
TATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTTT	57418	0.11423316644935015	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	52862	0.10516900004955848	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	370680	38.548855	1
ATAGAAT	413775	34.547855	3
TATAGAA	414055	34.416595	2
TAGAATT	423805	33.709522	4
GAATTCG	417050	33.66153	6
GCGTTTT	184715	33.512062	45
AGAATTC	421755	33.463814	5
AATTCGC	419650	33.30943	7
CGCGATA	198320	33.23718	21
ATTCGCG	425540	32.866135	8
TAATACG	183625	32.79086	26
GCGATAA	193145	32.687244	22
CGATAAT	192395	32.496216	23
AATACGA	179720	32.48561	27
TCGCGGC	425910	32.48326	10
TCGCGAT	409815	32.41245	20
TTCGCGG	432065	32.368877	9
ATACGAC	186700	32.33395	28
CTCGCGA	414335	32.2055	19
TACGACT	190625	32.199295	29