SRR616874_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616874_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55053810
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	872823	1.585399811566175	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	586719	1.0657191573117282	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	123962	0.22516516113961957	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	101747	0.18481373042120064	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	95564	0.17358290007539898	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	69363	0.12599128016753064	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	63194	0.11478587948772301	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	436530	34.713394	1
GCGTTTT	180015	33.919914	45
CGCGATA	194465	33.22316	21
TAATACG	180410	32.78044	26
GCGATAA	189705	32.687706	22
CGATAAT	188920	32.485928	23
ATACGAC	184590	32.36986	28
AATACGA	178180	32.322186	27
TACGACT	188055	32.21729	29
CGACTCA	186660	32.062687	31
ATAATAC	184500	32.0317	25
ACGACTC	189135	31.997602	30
ATAGAAT	475430	31.87914	3
CGCGATT	195790	31.8444	21
TATAGAA	475375	31.785456	2
TCGCGAT	438790	31.69529	20
TAGGGCG	192220	31.394194	41
TATAGGG	187190	31.3844	39
GACTCAC	191830	31.290018	32
GAATTCG	476325	31.28657	6