Basic Statistics
Measure | Value |
---|---|
Filename | SRR616866_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 48421523 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT | 876530 | 1.8102074154090528 | No Hit |
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT | 624611 | 1.2899449693063145 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 154242 | 0.3185401665288388 | No Hit |
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT | 108674 | 0.22443325460869953 | No Hit |
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT | 67034 | 0.13843843779965367 | No Hit |
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT | 63110 | 0.13033460347787904 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGA | 409785 | 0.0 | 37.803577 | 1 |
ATAGAAT | 441545 | 0.0 | 35.472843 | 3 |
TATAGAA | 439730 | 0.0 | 35.306107 | 2 |
GCGTTTT | 185955 | 0.0 | 35.294727 | 45 |
CGCGATA | 197975 | 0.0 | 34.911674 | 21 |
GAATTCG | 440945 | 0.0 | 34.7896 | 6 |
TAGAATT | 451195 | 0.0 | 34.607616 | 4 |
AGAATTC | 446385 | 0.0 | 34.508144 | 5 |
TAATACG | 187100 | 0.0 | 34.479465 | 26 |
AATTCGC | 441985 | 0.0 | 34.47531 | 7 |
GCGATAA | 194035 | 0.0 | 34.364487 | 22 |
CGATAAT | 194235 | 0.0 | 34.178963 | 23 |
AATACGA | 183165 | 0.0 | 34.118835 | 27 |
ATTCGCG | 446190 | 0.0 | 34.111652 | 8 |
ATACGAC | 189830 | 0.0 | 34.07405 | 28 |
TCGCGAT | 413090 | 0.0 | 34.043858 | 20 |
TACGACT | 192640 | 0.0 | 33.964645 | 29 |
TCGCGGC | 443035 | 0.0 | 33.82631 | 10 |
CGCGATT | 194225 | 0.0 | 33.81989 | 21 |
CGACTCA | 189865 | 0.0 | 33.774956 | 31 |