SRR616860_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616860_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	56278076
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1216382	2.161378082648028	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	923441	1.6408538913092907	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	425307	0.7557241295882254	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	144461	0.2566914334455926	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	137854	0.2449515154000645	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	82904	0.14731136153268637	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	80143	0.14240536581243468	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	66153	0.11754666239833785	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	597515	36.814377	1
GCGTTTT	243860	35.04158	45
CGCGATA	274755	34.679398	21
TAATACG	251585	34.227306	26
GCGATAA	267410	34.16174	22
ATAGAAT	647265	34.04485	3
TATAGAA	645130	33.994534	2
CGATAAT	265140	33.90662	23
AATACGA	245355	33.82781	27
ATAATAC	255240	33.713097	25
ATACGAC	253285	33.691593	28
TACGACT	256890	33.615543	29
CGACTCA	254030	33.57419	31
ACGACTC	258205	33.46352	30
TCGCGAT	609795	33.445896	20
GAATTCG	650755	33.348427	6
TAGAATT	661740	33.28557	4
AGAATTC	655315	33.247143	5
CGCGATT	285225	33.123947	21
AATTCGC	653350	33.054737	7