Basic Statistics
Measure | Value |
---|---|
Filename | SRR616851_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 63177316 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT | 1347743 | 2.133270428898879 | No Hit |
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT | 973121 | 1.540301268892145 | No Hit |
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT | 108311 | 0.1714396983879467 | No Hit |
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTC | 65099 | 0.10304173099091453 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTATAGA | 472285 | 0.0 | 84.48335 | 1 |
ATAGAAT | 513450 | 0.0 | 77.748116 | 3 |
GAATTCG | 513615 | 0.0 | 77.10466 | 6 |
TATAGAA | 518480 | 0.0 | 76.91862 | 2 |
AATTCGC | 520345 | 0.0 | 75.90861 | 7 |
ATTCGCG | 529875 | 0.0 | 74.7681 | 8 |
TAGAATT | 535205 | 0.0 | 74.61346 | 4 |
AGAATTC | 536035 | 0.0 | 74.28431 | 5 |
TTCGCGG | 539710 | 0.0 | 73.32273 | 9 |
CGCGATT | 260860 | 0.0 | 40.420986 | 20-21 |
CGCGATA | 244075 | 0.0 | 39.265083 | 20-21 |
CTCGCGA | 530060 | 0.0 | 39.260887 | 18-19 |
CGATTTT | 262695 | 0.0 | 38.943336 | 22-23 |
CGCGGCC | 545380 | 0.0 | 38.83809 | 10-11 |
CGCTCGC | 549610 | 0.0 | 38.584427 | 16-17 |
CGATAAT | 239170 | 0.0 | 38.190968 | 22-23 |
GCCGCTC | 556020 | 0.0 | 38.18181 | 14-15 |
CGACTCA | 243285 | 0.0 | 38.13923 | 30-31 |
TACGACT | 242275 | 0.0 | 38.125973 | 28-29 |
GCGATAA | 238735 | 0.0 | 38.02781 | 22-23 |