SRR616849_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616849_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	63382650
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1320588	2.0835165459317335	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	668871	1.0552903673166079	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	189995	0.2997586879059175	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	86410	0.13633068355456895	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	77552	0.12235525021437255	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTG	65258	0.10295877499599654	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	64467	0.10171079940646217	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	457615	39.061638	1
ATAGAAT	482435	36.874123	3
TATAGAA	486040	36.654522	2
GCGTTTT	236320	36.396793	45
GAATTCG	488610	36.031704	6
TAGAATT	493250	36.019974	4
AATTCGC	490030	35.788322	7
AGAATTC	494475	35.746628	5
ATTCGCG	496725	35.366776	8
TGTATAG	63085	35.21831	1
TCGCGGC	505720	34.863293	10
TTCGCGG	504360	34.856136	9
CGCGATA	258495	34.697437	21
TCGCGAT	514385	34.487465	20
CGCGGCC	513385	34.435146	11
CTCGCGA	515630	34.40535	19
TAATACG	242070	34.310226	26
GCGGCCG	516200	34.291218	12
CCGCTCG	521555	34.2019	16
GCTCGCG	520175	34.186356	18