SRR616844_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616844_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47872386
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1289771	2.694185746246281	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	706458	1.4757108617899262	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	278416	0.5815795352251714	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	147070	0.3072125964224971	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	73535	0.15360629821124855	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	69697	0.14558915028801783	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	67790	0.14160564296920566	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	63521	0.1326881847919592	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	56619	0.11827068740630559	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTTT	229595	36.30513	45
GTATAGA	539025	34.990425	1
ATAGAAT	570320	33.03631	3
TATAGAA	569780	33.025364	2
CGCGATA	268390	32.573914	21
TAGAATT	581650	32.372967	4
TAATACG	247320	32.293163	26
GAATTCG	577110	32.226204	6
AGAATTC	580370	32.194878	5
GCGATAA	260700	32.11676	22
CGCGATT	267245	32.044617	21
AATTCGC	579105	32.024002	7
TCGCGAT	570290	32.02324	20
AATACGA	242440	32.011616	27
CGATAAT	259315	32.002506	23
ATACGAC	251825	31.939213	28
TACGACT	256885	31.803825	29
ATAATAC	251815	31.768497	25
CGATTTT	261185	31.702702	23
GCGATTT	263140	31.695755	22