SRR616842_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616842_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52384200
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1155552	2.205917051324636	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	671664	1.282188140698913	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	189281	0.36133223376514295	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	97496	0.18611718800707083	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	64097	0.12235941371634958	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	61688	0.11776069883667212	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	53897	0.1028878936778647	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	450510	37.354614	1
GCGTTTT	211150	35.875523	45
ATAGAAT	479275	35.06856	3
TATAGAA	479955	34.975525	2
TAGAATT	490000	34.32404	4
GAATTCG	484105	34.304844	6
AATTCGC	486750	34.047737	7
AGAATTC	489655	34.034912	5
CGCGATA	233675	33.95371	21
TAATACG	216335	33.6554	26
ATTCGCG	493430	33.583675	8
GCGATAA	227095	33.469067	22
TCGCGAT	488490	33.447933	20
AATACGA	212075	33.369762	27
CGCGATT	234470	33.32218	21
CGATAAT	226450	33.285934	23
TCGCGGC	497140	33.26448	10
TTCGCGG	499425	33.190403	9
ATACGAC	221945	33.188034	28
CTCGCGA	494885	33.047512	19