SRR616841_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616841_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54927341
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1061161	1.9319358641445978	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	600502	1.0932661022131036	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	226776	0.412865425253336	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	116328	0.2117852382477426	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	70841	0.1289721998376	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	70334	0.12804916225600652	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	442875	35.3603	1
GCGTTTT	199380	35.33974	45
ATAGAAT	472760	33.116436	3
TATAGAA	472195	33.09195	2
CGCGATA	228130	32.38437	21
TAGAATT	485035	32.288376	4
GAATTCG	480370	32.215508	6
TAATACG	210690	32.044674	26
AGAATTC	484760	32.028343	5
AATTCGC	482485	32.014793	7
GCGATAA	221110	31.985064	22
CGATAAT	220645	31.791155	23
AATACGA	206815	31.74404	27
TCGCGAT	479485	31.697908	20
ATACGAC	216095	31.62106	28
ATTCGCG	489255	31.577774	8
CGCGATT	225635	31.54655	21
TACGACT	220475	31.498707	29
ATAATAC	215540	31.397833	25
CGACTCA	221255	31.346628	31