SRR616840_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616840_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	57455511
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1428612	2.486466441835318	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	787983	1.3714663507213434	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	248505	0.4325172566997098	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	127440	0.22180639904151228	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	76730	0.13354680632811708	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	74068	0.12891365634186075	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	69331	0.12066901641515293	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	59137	0.10292659306432764	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	548945	37.014854	1
GCGTTTT	255765	36.41846	45
ATAGAAT	581810	34.90982	3
TATAGAA	581125	34.85794	2
TAGAATT	593795	34.19014	4
GAATTCG	588665	34.14612	6
CGCGATA	287150	34.002106	21
AATTCGC	591025	33.945454	7
AGAATTC	593775	33.93624	5
TAATACG	267070	33.64914	26
GCGATAA	279170	33.58359	22
ATTCGCG	599715	33.465984	8
CGATAAT	277990	33.449852	23
TCGCGAT	592500	33.409992	20
AATACGA	261435	33.354576	27
ATACGAC	272460	33.265476	28
CGCGATT	280485	33.26387	21
TCGCGGC	603535	33.179047	10
TACGACT	278060	33.15284	29
TTCGCGG	606680	33.10728	9