SRR616839_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616839_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	54058089
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1322151	2.4457967798306743	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	761568	1.4087956383363829	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	186783	0.3455227579354498	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	89948	0.1663913794658927	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	86359	0.1597522250555324	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	61559	0.11387564958132351	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	59012	0.1091640512856457	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	55736	0.10310390365445585	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	486535	38.15625	1
GCGTTTT	231875	36.264503	45
ATAGAAT	520675	35.566936	3
TATAGAA	520400	35.56215	2
GAATTCG	527115	34.733807	6
TAGAATT	533155	34.7328	4
CGCGATA	254635	34.61681	21
AATTCGC	529505	34.505215	7
AGAATTC	533455	34.488853	5
GCGATAA	246890	34.218662	22
TAATACG	236850	34.180397	26
ATTCGCG	536765	34.068447	8
CGATAAT	246380	34.01446	23
TCGCGAT	533620	33.900894	20
AATACGA	232425	33.843773	27
ATACGAC	241825	33.820423	28
TCGCGGC	541850	33.724285	10
TACGACT	246485	33.710438	29
TTCGCGG	543650	33.657967	9
CGACTCA	246555	33.618637	31