SRR616838_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616838_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	53649803
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1300221	2.4235335961997846	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	715745	1.334105551142471	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	200447	0.3736211296060118	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	99341	0.18516563798006863	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	78758	0.14680016625596928	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	75280	0.14031738383084089	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	73421	0.13685231984915208	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	70930	0.13220924595007366	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	54666	0.10189412997471771	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	520865	36.648266	1
GCGTTTT	231240	35.978844	45
ATAGAAT	551340	34.532887	3
TATAGAA	551745	34.507984	2
CGCGATA	256320	34.13398	21
TAGAATT	564305	33.747986	4
GCGATAA	248450	33.730976	22
TAATACG	237285	33.720905	26
GAATTCG	558840	33.63169	6
CGATAAT	247180	33.54803	23
AGAATTC	564130	33.493153	5
AATACGA	232300	33.447876	27
AATTCGC	561345	33.426678	7
TCGCGAT	552690	33.38821	20
CGCGATT	261575	33.3837	21
ATACGAC	241770	33.34506	28
TACGACT	247140	33.21461	29
ATAATAC	241900	33.165997	25
GCGATTT	257665	33.017307	22
ATTCGCG	568695	33.007885	8