SRR616837_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616837_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	51933582
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1076643	2.0731152339925254	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	606061	1.166992486672689	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	263223	0.5068454550275389	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	136320	0.2624891154243896	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	69491	0.13380744659592322	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	54515	0.10497061419718749	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTTT	194055	35.59012	45
GTATAGA	437235	35.00403	1
TGTATAG	99475	33.82046	1
ATAGAAT	465630	32.81972	3
TATAGAA	466160	32.77284	2
TAGAATT	476345	32.080715	4
GAATTCG	471920	31.98193	6
AGAATTC	476545	31.814228	5
AATTCGC	473980	31.766289	7
CGCGATA	228205	31.702555	21
ATTCGCG	480510	31.387312	8
TAATACG	213390	31.358686	26
GCGATAA	222235	31.287985	22
TCGCGAT	476160	31.21461	20
CGCGATT	227665	31.199415	21
CGATAAT	221775	31.089966	23
TCGCGGC	484880	31.042206	10
AATACGA	208955	31.017473	27
TTCGCGG	486525	31.00234	9
ATACGAC	217345	30.925951	28