SRR616834_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616834_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	68738393
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1715297	2.4953987504479485	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	1015503	1.477344691488496	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	179316	0.2608673147188646	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	94254	0.1371198770969231	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	88951	0.12940512007605415	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	82734	0.12036068402122814	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	75323	0.10957922743407748	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTA	72922	0.10608627408557544	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTG	70483	0.10253803867658065	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	616020	39.792545	1
ATAGAAT	656780	37.222664	3
TATAGAA	657025	37.197483	2
TAGAATT	676625	36.159515	4
GAATTCG	672025	36.024193	6
AGAATTC	676490	35.928635	5
AATTCGC	680425	35.521545	7
ATTCGCG	692595	34.978584	8
GCGTTTT	313910	34.953938	45
CGCGATA	329925	34.493652	21
TTCGCGG	705510	34.399155	9
TCGCGGC	704040	34.39479	10
TCGCGAT	690305	34.184048	20
GCGATAA	319645	34.176846	22
CGCGGCC	708710	34.15886	11
TAATACG	310620	34.097443	26
CGCGATT	338755	34.066315	21
CGATAAT	318175	34.047497	23
CTCGCGA	695900	33.949062	19
AATACGA	303755	33.864952	27