SRR616828_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616828_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	52498080
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1070507	2.0391355264802065	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	596827	1.1368549097414609	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	204997	0.39048475677586686	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	102953	0.1961081243352138	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	74049	0.1410508727176308	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	65809	0.12535506060412113	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	65663	0.1250769551953138	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	58248	0.11095262912472227	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTTT	194900	35.62799	45
GTATAGA	447565	35.459713	1
ATAGAAT	477945	33.134373	3
TATAGAA	478240	33.11296	2
CGCGATA	220325	33.104202	21
TAATACG	203595	32.72688	26
GCGATAA	213930	32.635242	22
GAATTCG	478565	32.5401	6
TAGAATT	487085	32.47481	4
CGATAAT	213150	32.469494	23
AATACGA	200150	32.365913	27
AATTCGC	481185	32.296043	7
TCGCGAT	476050	32.27492	20
CGCGATT	224220	32.24801	21
ATACGAC	208810	32.231777	28
AGAATTC	487090	32.12826	5
TACGACT	213390	32.073742	29
ATAATAC	208420	32.046677	25
CGACTCA	213420	31.966827	31
ATTCGCG	487040	31.912563	8