SRR616822_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616822_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	55598469
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	1160459	2.08721394828336	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	645247	1.1605481438706524	No Hit
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTGTAGGGCGTTTT	137894	0.2480176207729749	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	123636	0.2223730297321676	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	90599	0.16295232877725463	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	81047	0.14577199958509648	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	69431	0.1248793379544318	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTGTTTTTTTTTTT	65802	0.11835217980552665	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	61121	0.10993288322381682	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	59672	0.10732669635201644	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATAGA	535020	37.314106	1
GCGTTTT	239360	36.545456	45
CGCGATA	258050	35.676952	21
TAATACG	239180	35.31192	26
GCGATAA	250040	35.234497	22
TATAGAA	567965	35.063652	2
ATAGAAT	568915	35.03548	3
AATACGA	234300	35.01841	27
CGATAAT	249605	34.97677	23
ATACGAC	244600	34.841602	28
ATAATAC	243565	34.699375	25
TACGACT	250120	34.697643	29
CGACTCA	249590	34.552784	31
ACGACTC	250895	34.47986	30
TCGCGAT	562425	34.468945	20
GAATTCG	573900	34.365025	6
TAGAATT	579820	34.362892	4
CGCGATT	260315	34.36085	21
TAGGGCG	252290	34.241875	41
AGAATTC	578445	34.194324	5