SRR616820_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR616820_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	41248610
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTTT	835878	2.0264391939510205	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTT	463754	1.1242900063783967	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTATAGGGCGTTT	149307	0.36196856087999085	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	101947	0.24715257071692842	No Hit
GTATAGAATTCGCGGCCGCTCGCGATAATACGACTCACTGTAGGGCGTTTT	100521	0.24369548452663012	No Hit
TGTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTT	78836	0.19112401605775323	No Hit
TATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTTT	61188	0.1483395440476661	No Hit
GTATAGAATTCGCGGCCGCTCGCGATGTATAGAATTCGCGGCCGCTCGCGA	48716	0.11810337366519744	No Hit
GTATAGAATTCGCGGCCGCTCGCGATTTTTTTTTTTTTTTTTTTTTTTTTC	45534	0.11038917432611668	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GCGTTTT	177480	35.81859	45
GTATAGA	399460	35.79957	1
TATAGAA	427620	33.359474	2
ATAGAAT	427630	33.350185	3
CGCGATA	201850	33.11768	21
TAATACG	187340	32.705288	26
GCGATAA	196435	32.68873	22
TAGAATT	436450	32.68052	4
GAATTCG	433290	32.599426	6
CGATAAT	195505	32.51426	23
AGAATTC	436515	32.441776	5
AATTCGC	436160	32.42783	7
AATACGA	183565	32.416912	27
ATACGAC	190975	32.38311	28
TACGACT	194085	32.302715	29
TCGCGAT	432385	32.178223	20
ATAATAC	190535	32.17599	25
CGACTCA	193760	32.134865	31
ATTCGCG	440660	32.1118	8
CGCGATT	203900	32.104668	21