SRR799683_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR799683_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5848219
Sequences flagged as poor quality	0
Sequence length	101
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	40495	0.6924330296112372	No Hit
AAGCAGTGGTATCAACGCAGAGTCACCGGGTTTCGGGTCTATACCCTGCA	35726	0.6108868358041996	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	29023	0.49627074499091095	No Hit
AAAAAAAAAAAAAAAAAAAAAANAAAAAAAAAAAAAAAAAAAAAAAAAAA	12297	0.21026914347769807	No Hit
AAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAA	10763	0.18403893561441526	No Hit
AAGCAGTGGTATCAACGCAGAGNCACCGGGTTTCGGGTCTATACCCTGCA	9341	0.15972384071116352	No Hit
AAGCAGTGGTATCAACGCAGAGTCACCGGGTTTCGGGTCTATATCCTGCA	7397	0.12648295147633834	No Hit
AAGCAGTGGTATCAACGCAGAGNACTTTTTTTTTTTTTTTTTTTTTTTTT	6608	0.11299166464183369	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGGTAT	191510	71.51652	6
TGGTATC	190675	71.37377	7
AGTGGTA	192370	71.252754	5
GTATCAA	192820	70.99181	9
GGTATCA	193145	70.83055	8
CAGTGGT	193570	70.704056	4
AAGCAGT	201315	68.717285	1
AGCAGTG	205940	67.11504	2
GCAGTGG	208095	66.38628	3
TCACCGG	7840	44.150192	22-23
GTCACCG	7995	43.403484	22-23
CTTAACG	9660	42.54936	52-53
TAACGCC	9730	42.36117	54-55
TCGGTTA	9725	41.1137	94-95
AGACTCG	9980	40.923553	66-67
CAGAGTA	45860	40.80656	18-19
TATACCC	8630	40.61936	40-41
CTATTCG	10185	40.456635	90-91
GGTCTAT	9800	40.396954	36-37
GTCTATA	9790	40.36647	36-37