SRR578601_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR578601_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8433580
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1167995	13.849338003552466	No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT	25916	0.30729535974046607	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGCCAGCAGCTGACCCAGC	21166	0.2509728964449261	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGACAGCACTCGGCCAGCTTC	19915	0.23613933821698493	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9926	0.11769616224663784	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG	9361	0.11099675345464205	No Hit
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT	8778	0.10408391217015787	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTGGTA	249175	91.646255	5
AAGCAGT	250860	91.4605	1
GGTATCA	249870	91.4476	8
TGGTATC	249540	91.411285	7
GTATCAA	250235	91.297676	9
GTGGTAT	250670	91.052826	6
AGCAGTG	251900	90.95797	2
GCAGTGG	252230	90.67214	3
CAGTGGT	252055	90.39179	4
CAACGCA	249785	46.24504	12-13
ATCAACG	250225	46.170788	10-11
TCAACGC	249525	46.06284	12-13
ACGCAGA	250895	46.04705	14-15
AACGCAG	250540	45.96534	14-15
CGCAGAG	251410	45.783962	16-17
TATCAAC	250885	45.727386	10-11
AGAGTAC	245645	45.703255	18-19
CAGAGTA	249930	45.52117	18-19
GCAGAGT	252900	45.48041	16-17
GAGTACT	145660	45.348053	20-21