FastQCFastQC Report
Sat 18 Jun 2016
SRR578600_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR578600_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8378549
Sequences flagged as poor quality0
Sequence length101
%GC41

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT117077813.973517371563979No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT258050.30798888924562No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGCCAGCAGCTGACCCAGC213120.2543638522612925No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATCCGCAGCGGCTTCTGA125840.15019307042305297No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA102690.12256298793502311No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG94920.11328930582133016No Hit
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT85740.10233275475264272No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTGGTA2491000.091.5984045
GGTATCA2501700.091.440188
AAGCAGT2513150.091.354981
GTATCAA2509950.091.3162169
TGGTATC2495600.091.3144457
GTGGTAT2510800.090.929826
AGCAGTG2525400.090.719582
GCAGTGG2527700.090.45733
CAGTGGT2526800.090.256294
CAACGCA2499500.046.27364712-13
ATCAACG2501800.046.23469510-11
TCAACGC2500650.046.07947512-13
ACGCAGA2513400.046.05133414-15
AACGCAG2509350.045.97040614-15
CGCAGAG2516350.045.77650516-17
TATCAAC2517850.045.7135210-11
AGAGTAC2459100.045.6960318-19
GCAGAGT2528450.045.50389516-17
CAGAGTA2502750.045.49596418-19
GAGTACT1459800.045.364820-21