SRR578600_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR578600_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8378549
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1170778	13.973517371563979	No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT	25805	0.30798888924562	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGCCAGCAGCTGACCCAGC	21312	0.2543638522612925	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAATCCGCAGCGGCTTCTGA	12584	0.15019307042305297	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	10269	0.12256298793502311	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG	9492	0.11328930582133016	No Hit
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT	8574	0.10233275475264272	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTGGTA	249100	91.598404	5
GGTATCA	250170	91.44018	8
AAGCAGT	251315	91.35498	1
GTATCAA	250995	91.316216	9
TGGTATC	249560	91.314445	7
GTGGTAT	251080	90.92982	6
AGCAGTG	252540	90.71958	2
GCAGTGG	252770	90.4573	3
CAGTGGT	252680	90.25629	4
CAACGCA	249950	46.273647	12-13
ATCAACG	250180	46.234695	10-11
TCAACGC	250065	46.079475	12-13
ACGCAGA	251340	46.051334	14-15
AACGCAG	250935	45.970406	14-15
CGCAGAG	251635	45.776505	16-17
TATCAAC	251785	45.71352	10-11
AGAGTAC	245910	45.69603	18-19
GCAGAGT	252845	45.503895	16-17
CAGAGTA	250275	45.495964	18-19
GAGTACT	145980	45.3648	20-21