SRR578599_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR578599_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8477944
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1142770	13.479329422322204	No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT	25439	0.30006095817570866	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG	10445	0.1232020404947237	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	9851	0.11619562478827415	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTA	8732	0.10299666994733629	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGACACACAGCAGCAGCAG	8730	0.10297307932206204	No Hit
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT	8595	0.10138071211605079	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTGGTA	250965	91.40816	5
AAGCAGT	252430	91.202446	1
GGTATCA	251725	91.17222	8
GTATCAA	251995	91.13104	9
TGGTATC	252035	90.988495	7
GTGGTAT	253030	90.68619	6
AGCAGTG	253960	90.61024	2
GCAGTGG	254115	90.33623	3
CAGTGGT	254545	90.015915	4
CAACGCA	251325	46.156483	12-13
ATCAACG	251700	46.109142	10-11
TCAACGC	251400	45.968052	12-13
ACGCAGA	252445	45.958378	14-15
AACGCAG	252080	45.860165	14-15
CGCAGAG	252900	45.668015	16-17
AGAGTAC	247630	45.617302	18-19
TATCAAC	253160	45.606026	10-11
CAGAGTA	251780	45.395077	18-19
GAGTACT	142085	45.358376	20-21
GCAGAGT	254715	45.348194	16-17