SRR578593_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR578593_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8525597
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1022639	11.99492539935913	No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT	20478	0.24019432304857946	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG	11733	0.13762086103764934	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGGAGACACACAGCAGCAGCAG	9225	0.1082035662722505	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTA	8876	0.10411001129891548	No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGACTAATCCTAGCCCTAGCCC	8863	0.10395752930850474	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTC	8634	0.10127150040049981	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	239480	91.313545	1
AGTGGTA	238990	91.177826	5
TGGTATC	240060	90.79948	7
GGTATCA	240350	90.78669	8
GTATCAA	240515	90.74917	9
GTGGTAT	240480	90.67393	6
AGCAGTG	242300	90.200134	2
GCAGTGG	242000	90.170074	3
CAGTGGT	243040	89.604614	4
CAACGCA	239170	46.00176	12-13
ATCAACG	239455	45.999676	10-11
TCAACGC	239115	45.916058	12-13
ACGCAGA	240290	45.80356	14-15
AACGCAG	240420	45.639603	14-15
CGCAGAG	240655	45.55226	16-17
TATCAAC	241205	45.47012	10-11
AGAGTAC	235905	45.420506	18-19
CAGAGTA	239445	45.23064	18-19
GCAGAGT	242545	45.166977	16-17
GAGTACT	129395	45.03008	20-21