Basic Statistics
Measure | Value |
---|---|
Filename | SRR578576_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10041330 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13997 | 0.13939388507299333 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCACG | 415 | 0.0 | 36.608177 | 3 |
ACTCGCG | 325 | 0.0 | 23.37722 | 50-51 |
CTCGCGT | 320 | 0.0 | 23.00019 | 52-53 |
CGCGTAG | 325 | 0.0 | 22.64358 | 54-55 |
TCGCGTA | 315 | 0.0 | 22.611557 | 52-53 |
CGTAGCG | 350 | 0.0 | 20.3467 | 56-57 |
CGTACGC | 365 | 0.0 | 20.160936 | 20-21 |
ACGTACG | 390 | 0.0 | 18.868568 | 20-21 |
ATCAACG | 7430 | 0.0 | 18.242384 | 10-11 |
CAACGCA | 7655 | 0.0 | 17.582115 | 12-13 |
CGCTAGT | 425 | 0.0 | 16.7569 | 90-91 |
GTATCAA | 9835 | 0.0 | 16.557133 | 9 |
GGTATCA | 10095 | 0.0 | 16.08367 | 8 |
AGTGGTA | 9980 | 0.0 | 16.031393 | 5 |
TCAACGC | 7480 | 0.0 | 15.613411 | 10-11 |
AACGCAG | 7800 | 0.0 | 14.942392 | 12-13 |
ACGCAGA | 9015 | 0.0 | 14.929683 | 14-15 |
AAGCAGT | 12105 | 0.0 | 14.181071 | 1 |
TGGTATC | 11500 | 0.0 | 14.159949 | 7 |
GTGGTAT | 12080 | 0.0 | 13.362248 | 6 |