Basic Statistics
Measure | Value |
---|---|
Filename | SRR578575_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9421315 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 43 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13097 | 0.13901456431506642 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9883 | 0.10490043056622138 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCACG | 325 | 0.0 | 26.2646 | 3 |
ATCAACG | 7430 | 0.0 | 19.780697 | 10-11 |
CAACGCA | 7450 | 0.0 | 19.663958 | 12-13 |
ACTCGCG | 245 | 0.0 | 18.383415 | 50-51 |
TCGCGTA | 240 | 0.0 | 17.7787 | 52-53 |
CGCGTAG | 255 | 0.0 | 17.662498 | 54-55 |
CGTACGC | 245 | 0.0 | 17.417255 | 20-21 |
CGTAGCG | 260 | 0.0 | 17.322834 | 56-57 |
TCAACGC | 7310 | 0.0 | 17.219315 | 10-11 |
GTATCAA | 9685 | 0.0 | 16.498787 | 9 |
ACGCAGA | 9005 | 0.0 | 16.39997 | 14-15 |
CTCGCGT | 275 | 0.0 | 16.377954 | 52-53 |
AGTGGTA | 9685 | 0.0 | 16.255032 | 5 |
AACGCAG | 7835 | 0.0 | 16.186522 | 12-13 |
GGTATCA | 9875 | 0.0 | 15.941938 | 8 |
AAGCAGT | 11015 | 0.0 | 15.45761 | 1 |
ACGTACG | 290 | 1.8189894E-12 | 14.714578 | 20-21 |
TGGTATC | 10955 | 0.0 | 14.543437 | 7 |
AGAGTAC | 10240 | 0.0 | 14.260489 | 18-19 |
TATCAAC | 9900 | 0.0 | 13.74575 | 9 |