Basic Statistics
Measure | Value |
---|---|
Filename | SRR578574_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7490161 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 89990 | 1.2014427994271417 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 9723 | 0.12981029379742304 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8594 | 0.11473718655713809 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCACG | 605 | 0.0 | 37.685635 | 3 |
CTCGCGT | 385 | 0.0 | 27.76062 | 52-53 |
CGCGTAG | 430 | 0.0 | 27.063997 | 54-55 |
ACGTACG | 445 | 0.0 | 26.150244 | 20-21 |
CGTACGC | 445 | 0.0 | 25.616566 | 20-21 |
TCGCGTA | 475 | 0.0 | 23.000729 | 52-53 |
ACTCGCG | 490 | 0.0 | 22.782095 | 50-51 |
CGTAGCG | 510 | 0.0 | 20.955568 | 56-57 |
ACGTGTA | 1145 | 0.0 | 20.741217 | 7 |
CGCTAGT | 555 | 0.0 | 19.684061 | 90-91 |
GTCACGT | 1200 | 0.0 | 19.395672 | 4 |
CAACGCA | 5680 | 0.0 | 19.358528 | 12-13 |
CGTGTAC | 1180 | 0.0 | 19.32097 | 8 |
ATCAACG | 5905 | 0.0 | 18.580687 | 10-11 |
CGCGGTA | 360 | 0.0 | 18.471945 | 36-37 |
GGTATCA | 7135 | 0.0 | 17.574366 | 8 |
AAGCAGT | 7725 | 0.0 | 17.364584 | 1 |
CGCATAC | 685 | 0.0 | 17.336084 | 24-25 |
ACGCATA | 685 | 0.0 | 16.989363 | 24-25 |
GTATCAA | 7445 | 0.0 | 16.778793 | 9 |