Basic Statistics
Measure | Value |
---|---|
Filename | SRR578568_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8038250 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 122060 | 1.5184897210213666 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22267 | 0.2770130314434112 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8760 | 0.1089789444219824 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCACG | 375 | 0.0 | 27.865831 | 3 |
CGCGTAG | 220 | 0.0 | 24.829496 | 54-55 |
CTCGCGT | 230 | 0.0 | 23.75106 | 52-53 |
CGTACGC | 285 | 0.0 | 19.998777 | 20-21 |
CAACGCA | 5910 | 0.0 | 19.85073 | 12-13 |
ATCAACG | 6090 | 0.0 | 19.57598 | 10-11 |
ACGTACG | 340 | 0.0 | 18.160656 | 20-21 |
TCAACGC | 5720 | 0.0 | 18.102041 | 10-11 |
ACTCGCG | 305 | 0.0 | 17.911083 | 50-51 |
CGTAGCG | 310 | 0.0 | 16.854334 | 56-57 |
AACGCAG | 6155 | 0.0 | 16.70694 | 12-13 |
GGTATCA | 7215 | 0.0 | 16.655357 | 8 |
GTATCAA | 7595 | 0.0 | 16.009655 | 9 |
AGTGGTA | 7580 | 0.0 | 15.916113 | 5 |
TCGCGTA | 345 | 0.0 | 15.83404 | 52-53 |
ACGCAGA | 7555 | 0.0 | 15.654238 | 14-15 |
TGGTATC | 8500 | 0.0 | 14.584495 | 7 |
TATCAAC | 8235 | 0.0 | 14.36169 | 9 |
CGCTAGT | 390 | 0.0 | 14.00586 | 90-91 |
GTGGTAT | 8975 | 0.0 | 13.6009245 | 6 |