Basic Statistics
Measure | Value |
---|---|
Filename | SRR578563_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7813112 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 91773 | 1.174602386347463 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15699 | 0.2009314598331625 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 8700 | 0.11135127718635034 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTCACG | 400 | 0.0 | 21.340963 | 3 |
CAACGCA | 6035 | 0.0 | 20.503132 | 12-13 |
ATCAACG | 6060 | 0.0 | 20.418547 | 10-11 |
TCAACGC | 5940 | 0.0 | 18.077513 | 10-11 |
GGTATCA | 7475 | 0.0 | 17.25466 | 8 |
AACGCAG | 6285 | 0.0 | 17.122908 | 12-13 |
AGTGGTA | 7775 | 0.0 | 16.89415 | 5 |
CGCGTAG | 240 | 1.8189894E-12 | 16.790537 | 54-55 |
GTATCAA | 7970 | 0.0 | 16.300749 | 9 |
ACGCAGA | 7940 | 0.0 | 15.703345 | 14-15 |
TCGCGTA | 265 | 7.2759576E-12 | 15.206525 | 52-53 |
TGGTATC | 8705 | 0.0 | 15.197919 | 7 |
AAGCAGT | 9240 | 0.0 | 14.987591 | 1 |
AGAGTAC | 8340 | 0.0 | 14.723609 | 18-19 |
CTCGCGT | 275 | 1.2732926E-11 | 14.653562 | 52-53 |
ACTCGCG | 280 | 1.6370905E-11 | 14.391891 | 50-51 |
TATCAAC | 8520 | 0.0 | 14.302398 | 9 |
CGTAGCG | 305 | 5.456968E-12 | 13.989417 | 56-57 |
GTGGTAT | 10465 | 0.0 | 13.140366 | 6 |
ACGTACG | 345 | 3.6379788E-12 | 13.056208 | 20-21 |