Basic Statistics
Measure | Value |
---|---|
Filename | SRR578561_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 10452514 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 44 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 131132 | 1.2545498623584719 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12321 | 0.11787594831253036 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 11519 | 0.11020315304050299 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
ATCAACG | 7325 | 0.0 | 19.217678 | 10-11 |
CAACGCA | 7320 | 0.0 | 19.16581 | 12-13 |
CGTCACG | 430 | 3.6379788E-12 | 17.666096 | 3 |
TCAACGC | 7145 | 0.0 | 17.475811 | 10-11 |
GGTATCA | 9580 | 0.0 | 16.899576 | 8 |
AGTGGTA | 9745 | 0.0 | 16.759756 | 5 |
GTATCAA | 9905 | 0.0 | 16.488873 | 9 |
AACGCAG | 7730 | 0.0 | 16.12243 | 12-13 |
AAGCAGT | 11085 | 0.0 | 15.270749 | 1 |
CTCGCGT | 220 | 1.6789272E-9 | 15.107567 | 52-53 |
TGGTATC | 11250 | 0.0 | 14.686414 | 7 |
TCGCGTA | 230 | 3.1450327E-9 | 14.450717 | 52-53 |
ACGCAGA | 10095 | 0.0 | 14.132498 | 14-15 |
AGAGTAC | 10905 | 0.0 | 12.865206 | 18-19 |
TATCAAC | 10305 | 0.0 | 12.393423 | 8 |
CGCGTAG | 270 | 2.9796865E-8 | 12.309311 | 54-55 |
GCAGTGG | 13830 | 0.0 | 12.221285 | 3 |
GTGGTAT | 13640 | 0.0 | 12.14787 | 6 |
CAGTGGT | 15350 | 0.0 | 11.351492 | 4 |
CGCTAGT | 315 | 2.0796506E-8 | 11.304468 | 90-91 |