Basic Statistics
Measure | Value |
---|---|
Filename | SRR578559_2.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9051648 |
Sequences flagged as poor quality | 0 |
Sequence length | 101 |
%GC | 41 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1149835 | 12.703045898382262 | No Hit |
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT | 28142 | 0.3109047103908592 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 10030 | 0.11080855110583178 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG | 9635 | 0.1064447048758414 | No Hit |
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT | 9515 | 0.10511897943888228 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
AGTGGTA | 253760 | 0.0 | 91.87124 | 5 |
AAGCAGT | 255090 | 0.0 | 91.66621 | 1 |
GGTATCA | 255440 | 0.0 | 91.38126 | 8 |
GTATCAA | 255350 | 0.0 | 91.36205 | 9 |
TGGTATC | 255965 | 0.0 | 91.16106 | 7 |
GCAGTGG | 257195 | 0.0 | 90.79723 | 3 |
GTGGTAT | 257520 | 0.0 | 90.70704 | 6 |
AGCAGTG | 257875 | 0.0 | 90.686646 | 2 |
CAGTGGT | 257270 | 0.0 | 90.480225 | 4 |
TCAACGC | 254505 | 0.0 | 46.40309 | 12-13 |
CAACGCA | 254780 | 0.0 | 46.232727 | 12-13 |
AACGCAG | 255750 | 0.0 | 46.22467 | 14-15 |
ATCAACG | 254625 | 0.0 | 46.224247 | 10-11 |
CGCAGAG | 257145 | 0.0 | 46.015 | 16-17 |
ACGCAGA | 256195 | 0.0 | 45.998814 | 14-15 |
TATCAAC | 256500 | 0.0 | 45.92432 | 10-11 |
CAGAGTA | 255340 | 0.0 | 45.79555 | 18-19 |
AGAGTAC | 250720 | 0.0 | 45.627747 | 18-19 |
GAGTACT | 147230 | 0.0 | 45.44031 | 20-21 |
GCAGAGT | 258455 | 0.0 | 45.411438 | 16-17 |