SRR578550_2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR578550_2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7178701
Sequences flagged as poor quality	0
Sequence length	101
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	1113788	15.515174681324659	No Hit
AAGCAGTGGTATCAACGCAGAGTATTTTTTTTTTTTTTTTTTTTTTTTTT	24571	0.34227640906063644	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTG	9869	0.1374761255553059	No Hit
TAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT	8813	0.12276594330924216	No Hit
AAGCAGTGGTATCAACGCAGAGTACCTTTTTTTTTTTTTTTTTTTTTTTT	8508	0.11851726377794533	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTA	7493	0.10437821550166249	No Hit
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTC	7255	0.10106285245756857	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTGGTA	241175	91.68717	5
AAGCAGT	242315	91.67724	1
TGGTATC	241890	91.48013	7
GGTATCA	242035	91.452484	8
GTGGTAT	242145	91.439285	6
GTATCAA	242145	91.35158	9
AGCAGTG	243525	91.15797	2
GCAGTGG	243200	91.067726	3
CAGTGGT	243550	90.64308	4
TCAACGC	241435	46.46837	12-13
AACGCAG	242360	46.32796	14-15
CGCAGAG	243380	46.219593	16-17
CAACGCA	241675	46.15291	12-13
ATCAACG	241660	46.13933	10-11
TATCAAC	242775	46.12802	10-11
ACGCAGA	242400	46.046925	14-15
CAGAGTA	241375	45.977608	18-19
GAGTACT	141425	45.777058	20-21
AGAGTAC	237110	45.706875	18-19
GTACTTT	140660	45.576385	22-23