SRR522123_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR522123_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37790978
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	154551	0.40896268945461	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	152177	0.40268076682217646	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	81943	0.21683217618766043	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	58425	0.1546003916596178	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT	53509	0.14159199584620435	Illumina PCR Primer Index 1 (95% over 24bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	51807	0.13708827540795582	No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	47785	0.12644552358502076	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	60855	35.128418	1
TATGCCG	11635	31.885342	35
TCGTATG	12105	30.30188	32
GACCGAT	12275	30.253256	24
CGTATGC	12620	29.396515	33
TATCGTA	8670	28.652435	30
ATATCGT	8730	28.479887	29
GATATCG	8965	28.101484	28
CGATATC	8990	28.073214	27
AGACCGA	13655	27.840733	23
TGAGCGG	14410	27.671638	5
ACCGATA	9135	27.578413	25
GCGGGCT	14270	27.572742	8
CCGTCTT	13770	26.973175	39
GCCGTCT	13905	26.663828	38
ATCGTAT	9610	26.377148	31
CAGACCG	14585	26.260233	22
CCGATAT	9740	26.046133	26
AGCGGGC	15330	25.637959	7
ATGCCGT	14645	25.301973	36