SRR522120_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR522120_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26575823
Sequences flagged as poor quality	0
Sequence length	50
%GC	44

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	98252	0.36970444904001654	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	95689	0.3600603450737913	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	55406	0.20848272506932336	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	32648	0.1228485003079679	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31836	0.11979309163821568	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT	30406	0.11441226109912006	Illumina PCR Primer Index 1 (95% over 24bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	27449	0.1032856066207244	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	40585	35.882286	1
TATGCCG	6570	31.818733	35
GACCGAT	6740	30.91428	24
TCGTATG	6775	30.856186	32
CGTATGC	7075	29.765123	33
ATATCGT	4985	29.530449	29
TATCGTA	5120	28.707651	30
ATCGTAT	5300	27.94262	31
AGACCGA	7790	27.256414	23
ACCGATA	5535	27.071457	25
GATATCG	5565	26.887094	28
GCCGTCT	7980	26.773895	38
GCGGGCT	8280	26.664669	8
CGATATC	5675	26.444927	27
CCGATAT	5745	26.273989	26
CCGTCTT	8260	25.813078	39
CGGGCTG	9180	24.313988	9
TGAGCGG	9620	23.359596	5
CAGACCG	9300	23.228214	22
ATGCCGT	9280	22.763924	36