Basic Statistics
Measure | Value |
---|---|
Filename | SRR522113_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 31014591 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 42 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT | 186989 | 0.6029065480824816 | Illumina PCR Primer Index 1 (95% over 24bp) |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 179984 | 0.5803204046766246 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 137710 | 0.44401681776167873 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 92346 | 0.29775017829511274 | No Hit |
GTACATGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGAC | 83582 | 0.2694925107991913 | No Hit |
TCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCT | 76502 | 0.24666454572946006 | Illumina Paired End PCR Primer 2 (96% over 29bp) |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 38674 | 0.12469614704898092 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 32327 | 0.10423158570751424 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 31886 | 0.10280967432393354 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATGCCG | 36265 | 0.0 | 37.124794 | 35 |
GACCGAT | 36990 | 0.0 | 36.536053 | 24 |
TCGTATG | 37085 | 0.0 | 36.460102 | 32 |
GGTATCA | 84640 | 0.0 | 36.42879 | 1 |
CGTATGC | 37275 | 0.0 | 36.22328 | 33 |
GCGGGCT | 40135 | 0.0 | 36.13528 | 8 |
ACCGATA | 25450 | 0.0 | 36.017563 | 25 |
TATCGTA | 25150 | 0.0 | 35.97113 | 30 |
AGACCGA | 39245 | 0.0 | 35.875034 | 23 |
ATGCCGT | 36775 | 0.0 | 35.796513 | 36 |
CCGATAT | 25540 | 0.0 | 35.787285 | 26 |
CCGTCTT | 36545 | 0.0 | 35.73171 | 39 |
TGAGCGG | 40760 | 0.0 | 35.71567 | 5 |
ATATCGT | 25410 | 0.0 | 35.60083 | 29 |
AGCGGGC | 40860 | 0.0 | 35.579826 | 7 |
CGATATC | 25780 | 0.0 | 35.53229 | 27 |
GCCGTCT | 36705 | 0.0 | 35.528545 | 38 |
GATATCG | 25790 | 0.0 | 35.483818 | 28 |
CAGACCG | 40235 | 0.0 | 35.2648 | 22 |
CGGGCTG | 41245 | 0.0 | 35.237446 | 9 |