SRR522111_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR522111_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37150617
Sequences flagged as poor quality	0
Sequence length	50
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	195230	0.5255094417409003	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT	175472	0.4723259374130987	Illumina PCR Primer Index 1 (95% over 24bp)
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	156828	0.42214103738842346	No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97460	0.262337500343534	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCT	92349	0.2485799899366409	Illumina Paired End PCR Primer 2 (96% over 29bp)
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	44409	0.11953771857947879	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	88130	36.072403	1
TATGCCG	40405	35.702324	35
GACCGAT	42545	34.987373	24
TCGTATG	41765	34.77973	32
CGTATGC	41965	34.53661	33
GCGGGCT	47400	34.37236	8
AGACCGA	45705	34.362362	23
ACCGATA	27470	34.31412	25
TATCGTA	26570	34.264717	30
GCCGTCT	40125	34.256058	38
CCGTCTT	40425	33.982754	39
CCGATAT	27550	33.92881	26
ATGCCGT	41055	33.90156	36
ATATCGT	26960	33.748497	29
CGGGCTG	48375	33.74327	9
GATATCG	27785	33.675602	28
CGATATC	27870	33.604427	27
CAGACCG	47195	33.58729	22
TGAGCGG	48825	33.514206	5
ATCGTAT	27850	33.387554	31