SRR522108_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	SRR522108_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	26676300
Sequences flagged as poor quality	0
Sequence length	50
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	202666	0.7597230500481701	No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	148626	0.5571462309240787	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATATCGTATGCCGTCTTCTGCT	96655	0.3623253599637131	Illumina PCR Primer Index 1 (95% over 24bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	96649	0.3623028680889029	No Hit
GTACATGGGGGAGCCATTGTGGCTCCGGCCGGTTGCGCGGGCCCTCGGAC	90214	0.3381803323549368	No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	37017	0.13876362164168193	No Hit
TCTCTGAGCGGGCTGGCAAGGCAGACCGATCTCGTATGCCGTCTTCTGCT	36486	0.13677309072097707	Illumina Paired End PCR Primer 2 (96% over 29bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28569	0.10709506190888542	No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	28481	0.10676518107833545	No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG	26842	0.10062115060934237	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTATCA	106495	36.39109	1
TATGCCG	20610	34.17759	35
CCGTCTT	20530	33.284264	39
GCCGTCT	20715	32.986023	38
CGTCTTC	20675	32.899372	40
ATGCCGT	21065	32.68715	36
GACCGAT	21695	32.39822	24
TCGTATG	21645	32.30767	32
GATATCG	15470	32.058228	28
CGTATGC	21980	32.006252	33
TATCGTA	15325	31.959846	30
ACCGATA	15635	31.883219	25
CGATATC	15595	31.801685	27
AGACCGA	22980	31.716097	23
ATCGTAT	15710	31.709068	31
TGAGCGG	24025	31.566282	5
ATATCGT	15470	31.560015	29
CCGATAT	15705	31.5511	26
TGCCGTC	21845	31.379578	37
GCGGGCT	24045	31.3712	8