Basic Statistics
Measure | Value |
---|---|
Filename | SRR522091_1.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 25431591 |
Sequences flagged as poor quality | 0 |
Sequence length | 50 |
%GC | 45 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG | 150510 | 0.5918229811103836 | Illumina Paired End PCR Primer 2 (100% over 31bp) |
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 51490 | 0.202464721927936 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GATCGGA | 23425 | 0.0 | 34.317104 | 21 |
ATGCCGA | 23625 | 0.0 | 34.186943 | 14 |
AGATCGG | 23610 | 0.0 | 34.06953 | 20 |
TGCCGAG | 24650 | 0.0 | 33.262997 | 15 |
CGAGATC | 24290 | 0.0 | 33.212967 | 18 |
ATCGGAA | 24420 | 0.0 | 32.887863 | 22 |
GAGCGGT | 24745 | 0.0 | 32.68154 | 29 |
TCGGAAG | 24930 | 0.0 | 32.19283 | 23 |
GCGGTTC | 25380 | 0.0 | 32.052856 | 31 |
GAGATCG | 25185 | 0.0 | 32.006172 | 19 |
AGAGCGG | 25345 | 0.0 | 31.939379 | 28 |
AAGAGCG | 25465 | 0.0 | 31.761919 | 27 |
CCGAGAT | 25510 | 0.0 | 31.72713 | 17 |
AGCGGTT | 25620 | 0.0 | 31.527866 | 30 |
GCCGAGA | 27185 | 0.0 | 30.200886 | 16 |
CGGAAGA | 27590 | 0.0 | 29.424707 | 24 |
GAAGAGC | 33975 | 0.0 | 24.01784 | 26 |
GGAAGAG | 38485 | 0.0 | 21.419708 | 25 |
AAGCAGT | 21645 | 0.0 | 20.498615 | 1 |
GAGTACT | 16170 | 0.0 | 20.27566 | 20 |