FastQCFastQC Report
Thu 26 May 2016
SRR522091_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR522091_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25431591
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCG1505100.5918229811103836Illumina Paired End PCR Primer 2 (100% over 31bp)
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT514900.202464721927936No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GATCGGA234250.034.31710421
ATGCCGA236250.034.18694314
AGATCGG236100.034.0695320
TGCCGAG246500.033.26299715
CGAGATC242900.033.21296718
ATCGGAA244200.032.88786322
GAGCGGT247450.032.6815429
TCGGAAG249300.032.1928323
GCGGTTC253800.032.05285631
GAGATCG251850.032.00617219
AGAGCGG253450.031.93937928
AAGAGCG254650.031.76191927
CCGAGAT255100.031.7271317
AGCGGTT256200.031.52786630
GCCGAGA271850.030.20088616
CGGAAGA275900.029.42470724
GAAGAGC339750.024.0178426
GGAAGAG384850.021.41970825
AAGCAGT216450.020.4986151
GAGTACT161700.020.2756620